miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21009 5' -55 NC_004735.1 + 93178 0.66 0.936374
Target:  5'- cGGGGUUCauuACauugaUAACCCCGGCGc -3'
miRNA:   3'- cCUCCAAGguuUGgg---GUUGGGGCUGC- -5'
21009 5' -55 NC_004735.1 + 25767 0.66 0.931361
Target:  5'- gGGucGUUCC-GACCCUAccACCCUuaaGGCGg -3'
miRNA:   3'- -CCucCAAGGuUUGGGGU--UGGGG---CUGC- -5'
21009 5' -55 NC_004735.1 + 13783 0.66 0.920611
Target:  5'- -aGGGUUCCA---CCCAGCCCCu--- -3'
miRNA:   3'- ccUCCAAGGUuugGGGUUGGGGcugc -5'
21009 5' -55 NC_004735.1 + 38812 0.67 0.887513
Target:  5'- aGGAGGUagCCAcgaaagcgauuGACguucucaagacauuCCCAGCCCCgGACa -3'
miRNA:   3'- -CCUCCAa-GGU-----------UUG--------------GGGUUGGGG-CUGc -5'
21009 5' -55 NC_004735.1 + 61000 0.68 0.878402
Target:  5'- uGAGGaagUCUGAucacaccaccuucuCCCC-ACCCCGGCGg -3'
miRNA:   3'- cCUCCa--AGGUUu-------------GGGGuUGGGGCUGC- -5'
21009 5' -55 NC_004735.1 + 117713 0.68 0.875522
Target:  5'- -cAGGcgCCGuuCCCCuucccgacaagcAACCCCGACu -3'
miRNA:   3'- ccUCCaaGGUuuGGGG------------UUGGGGCUGc -5'
21009 5' -55 NC_004735.1 + 45403 0.69 0.819805
Target:  5'- uGAGGUcuucgagCCGGACaCCCuuACCCuCGGCGa -3'
miRNA:   3'- cCUCCAa------GGUUUG-GGGu-UGGG-GCUGC- -5'
21009 5' -55 NC_004735.1 + 61239 0.74 0.523641
Target:  5'- aGGGGGUauggaacuUCC-GGCUCCAACCCCGGa- -3'
miRNA:   3'- -CCUCCA--------AGGuUUGGGGUUGGGGCUgc -5'
21009 5' -55 NC_004735.1 + 67953 0.78 0.338063
Target:  5'- -cGGGUUgCCAccAACCCCAgaGCCCCGGCa -3'
miRNA:   3'- ccUCCAA-GGU--UUGGGGU--UGGGGCUGc -5'
21009 5' -55 NC_004735.1 + 38931 1.11 0.002782
Target:  5'- cGGAGGUUCCAAACCCCAACCCCGACGc -3'
miRNA:   3'- -CCUCCAAGGUUUGGGGUUGGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.