miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2101 3' -48.8 NC_001348.1 + 14335 0.66 0.997525
Target:  5'- -cUCGUCGUCgaucgCGUCCUCCu----- -3'
miRNA:   3'- caAGUAGCAGaa---GUAGGAGGcuacug -5'
2101 3' -48.8 NC_001348.1 + 14287 0.66 0.997525
Target:  5'- -cUCGUCGUCgaucgCGUCCUCCu----- -3'
miRNA:   3'- caAGUAGCAGaa---GUAGGAGGcuacug -5'
2101 3' -48.8 NC_001348.1 + 121691 0.67 0.995155
Target:  5'- aGUUUguuUCGUCUUCAUCCUCUuccucgucguGggGAUc -3'
miRNA:   3'- -CAAGu--AGCAGAAGUAGGAGG----------CuaCUG- -5'
2101 3' -48.8 NC_001348.1 + 108101 0.67 0.995155
Target:  5'- aGUUUguuUCGUCUUCAUCCUCUuccucgucguGggGAUc -3'
miRNA:   3'- -CAAGu--AGCAGAAGUAGGAGG----------CuaCUG- -5'
2101 3' -48.8 NC_001348.1 + 118646 0.67 0.993798
Target:  5'- aUUCcgCGUCggaAUCCcgaaauucaauuacaUCCGAUGGCg -3'
miRNA:   3'- cAAGuaGCAGaagUAGG---------------AGGCUACUG- -5'
2101 3' -48.8 NC_001348.1 + 111146 0.67 0.993798
Target:  5'- aUUCcgCGUCggaAUCCcgaaauucaauuacaUCCGAUGGCg -3'
miRNA:   3'- cAAGuaGCAGaagUAGG---------------AGGCUACUG- -5'
2101 3' -48.8 NC_001348.1 + 60252 0.67 0.992373
Target:  5'- -gUCAgaaUCUUCAUCCcCUGAUGAUg -3'
miRNA:   3'- caAGUagcAGAAGUAGGaGGCUACUG- -5'
2101 3' -48.8 NC_001348.1 + 105142 0.77 0.70159
Target:  5'- --aCAUCGUCcUCGUCCUCgGAgGACg -3'
miRNA:   3'- caaGUAGCAGaAGUAGGAGgCUaCUG- -5'
2101 3' -48.8 NC_001348.1 + 124650 0.77 0.70159
Target:  5'- --aCAUCGUCcUCGUCCUCgGAgGACg -3'
miRNA:   3'- caaGUAGCAGaAGUAGGAGgCUaCUG- -5'
2101 3' -48.8 NC_001348.1 + 124491 0.8 0.539273
Target:  5'- -gUCcUCGUCcUCGUCCUCCGAgGACg -3'
miRNA:   3'- caAGuAGCAGaAGUAGGAGGCUaCUG- -5'
2101 3' -48.8 NC_001348.1 + 105301 0.8 0.539273
Target:  5'- -gUCcUCGUCcUCGUCCUCCGAgGACg -3'
miRNA:   3'- caAGuAGCAGaAGUAGGAGGCUaCUG- -5'
2101 3' -48.8 NC_001348.1 + 107911 1.11 0.008494
Target:  5'- gGUUCAUCGUCUUCAUCCUCCGAUGACg -3'
miRNA:   3'- -CAAGUAGCAGAAGUAGGAGGCUACUG- -5'
2101 3' -48.8 NC_001348.1 + 121881 1.11 0.008494
Target:  5'- gGUUCAUCGUCUUCAUCCUCCGAUGACg -3'
miRNA:   3'- -CAAGUAGCAGAAGUAGGAGGCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.