Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2101 | 5' | -49.8 | NC_001348.1 | + | 111359 | 0.67 | 0.98381 |
Target: 5'- uGugGGGGAGuGGGGUGuuGugGAu- -3' miRNA: 3'- gCugCUCCUUcUCCUACuuCugCUuu -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 118433 | 0.67 | 0.98381 |
Target: 5'- uGugGGGGAGuGGGGUGuuGugGAu- -3' miRNA: 3'- gCugCUCCUUcUCCUACuuCugCUuu -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 118765 | 0.68 | 0.977051 |
Target: 5'- gGACGGGGAAGAcuuuauaguGGAaGAAGAaucaGAGGa -3' miRNA: 3'- gCUGCUCCUUCU---------CCUaCUUCUg---CUUU- -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 119887 | 0.67 | 0.988941 |
Target: 5'- uGGgGuGGAAuGGGGUGggGugGggGg -3' miRNA: 3'- gCUgCuCCUUcUCCUACuuCugCuuU- -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 120080 | 0.72 | 0.872157 |
Target: 5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGc -3' miRNA: 3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 120134 | 0.72 | 0.872157 |
Target: 5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGc -3' miRNA: 3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 121720 | 0.78 | 0.589661 |
Target: 5'- uCGugG-GGAucgucaucGGAGGAUGAAGACGAu- -3' miRNA: 3'- -GCugCuCCU--------UCUCCUACUUCUGCUuu -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 121847 | 1.07 | 0.011986 |
Target: 5'- aCGACGAGGAAGAGGAUGAAGACGAAAc -3' miRNA: 3'- -GCUGCUCCUUCUCCUACUUCUGCUUU- -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 124323 | 0.67 | 0.987395 |
Target: 5'- gGACGAuugGGAGGuGGGgugUGAAGACGc-- -3' miRNA: 3'- gCUGCU---CCUUCuCCU---ACUUCUGCuuu -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 124360 | 0.81 | 0.435904 |
Target: 5'- -aGCGAGGAGGGGGgcGggGACGAc- -3' miRNA: 3'- gcUGCUCCUUCUCCuaCuuCUGCUuu -5' |
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2101 | 5' | -49.8 | NC_001348.1 | + | 124512 | 0.68 | 0.974393 |
Target: 5'- gGACGAGGAcgauguguggGGAGGGcgcggGggGAgGAGc -3' miRNA: 3'- gCUGCUCCU----------UCUCCUa----CuuCUgCUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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