miRNA display CGI

Results 1 - 5 of 5 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21010	3'	-57.2	NC_004735.1	+	34232	0.66	0.815877
	Target:  5'- cCCCGCCGacUUCCUUggcgagcGCGGCUCc- -3' miRNA:   3'- cGGGCGGU--GGGGAAaaa----CGCCGAGuu -5'
21010	3'	-57.2	NC_004735.1	+	11846	0.66	0.806969
	Target:  5'- uUCCGCCACCaucgUUUGCGGgUgGAa -3' miRNA:   3'- cGGGCGGUGGggaaAAACGCCgAgUU- -5'
21010	3'	-57.2	NC_004735.1	+	60982	0.66	0.769784
	Target:  5'- -aUUGCCACCUCU---UGCGGCUgAGg -3' miRNA:   3'- cgGGCGGUGGGGAaaaACGCCGAgUU- -5'
21010	3'	-57.2	NC_004735.1	+	61025	0.74	0.344563
	Target:  5'- cUCC-CCACCCCggcg-GCGGCUCAAa -3' miRNA:   3'- cGGGcGGUGGGGaaaaaCGCCGAGUU- -5'
21010	3'	-57.2	NC_004735.1	+	40410	1.08	0.001687
	Target:  5'- cGCCCGCCACCCCUUUUUGCGGCUCAAg -3' miRNA:   3'- -CGGGCGGUGGGGAAAAACGCCGAGUU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home