miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21011 5' -50.6 NC_004735.1 + 93147 0.66 0.991813
Target:  5'- -aGAGAAGCGggacACACUACCA-GCa -3'
miRNA:   3'- cgCUCUUCGUgaacUGUGGUGGUaCG- -5'
21011 5' -50.6 NC_004735.1 + 106772 0.66 0.990599
Target:  5'- -gGGGAAaugacucuguacGcCGCUUGACuACCACCA-GCa -3'
miRNA:   3'- cgCUCUU------------C-GUGAACUG-UGGUGGUaCG- -5'
21011 5' -50.6 NC_004735.1 + 3236 0.66 0.989247
Target:  5'- -aGGGGAGC-CgUGGagcgAUCACCAUGCg -3'
miRNA:   3'- cgCUCUUCGuGaACUg---UGGUGGUACG- -5'
21011 5' -50.6 NC_004735.1 + 127419 0.67 0.984083
Target:  5'- gGCG-GAAGCuGCUUcguguccGACGCCGCgccgUAUGCg -3'
miRNA:   3'- -CGCuCUUCG-UGAA-------CUGUGGUG----GUACG- -5'
21011 5' -50.6 NC_004735.1 + 105714 0.67 0.980099
Target:  5'- uGCGAGAGGa--UUGcCGCCACUuuaGCa -3'
miRNA:   3'- -CGCUCUUCgugAACuGUGGUGGua-CG- -5'
21011 5' -50.6 NC_004735.1 + 123160 0.67 0.979407
Target:  5'- aGCGAgGAAGCAUUUGGaGCCaguucggggggauuACCGgcUGCa -3'
miRNA:   3'- -CGCU-CUUCGUGAACUgUGG--------------UGGU--ACG- -5'
21011 5' -50.6 NC_004735.1 + 63890 0.67 0.977724
Target:  5'- uCGAGAuGUACUUGGCGgcuucgaucCCACCAa-- -3'
miRNA:   3'- cGCUCUuCGUGAACUGU---------GGUGGUacg -5'
21011 5' -50.6 NC_004735.1 + 105160 0.67 0.975147
Target:  5'- uCGGGuucguGuCGCUUGAgCGCCuuGCCGUGCa -3'
miRNA:   3'- cGCUCuu---C-GUGAACU-GUGG--UGGUACG- -5'
21011 5' -50.6 NC_004735.1 + 23456 0.68 0.97236
Target:  5'- cUGGGGAGCACgcgUGGCAC-ACCAc-- -3'
miRNA:   3'- cGCUCUUCGUGa--ACUGUGgUGGUacg -5'
21011 5' -50.6 NC_004735.1 + 85660 0.68 0.965785
Target:  5'- aCGGGAuuGUGCUUGagcaauacaaaaaGCGCCACCA-GCa -3'
miRNA:   3'- cGCUCUu-CGUGAAC-------------UGUGGUGGUaCG- -5'
21011 5' -50.6 NC_004735.1 + 11208 0.69 0.946345
Target:  5'- uGCGGGAgAGCACU--GCAgCACCcauUGCc -3'
miRNA:   3'- -CGCUCU-UCGUGAacUGUgGUGGu--ACG- -5'
21011 5' -50.6 NC_004735.1 + 21057 0.69 0.936662
Target:  5'- cGCGGGAAGCACaccacacgccgUUGAUAcuucCCACCGa-- -3'
miRNA:   3'- -CGCUCUUCGUG-----------AACUGU----GGUGGUacg -5'
21011 5' -50.6 NC_004735.1 + 126701 0.7 0.925932
Target:  5'- uGCGGGAugucGguUUUGACACCGgCAUuGCu -3'
miRNA:   3'- -CGCUCUu---CguGAACUGUGGUgGUA-CG- -5'
21011 5' -50.6 NC_004735.1 + 22690 0.71 0.880169
Target:  5'- -gGAGAAGCACUac-CACCACCGg-- -3'
miRNA:   3'- cgCUCUUCGUGAacuGUGGUGGUacg -5'
21011 5' -50.6 NC_004735.1 + 44642 1.16 0.002887
Target:  5'- aGCGAGAAGCACUUGACACCACCAUGCg -3'
miRNA:   3'- -CGCUCUUCGUGAACUGUGGUGGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.