Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21015 | 3' | -52.9 | NC_004735.1 | + | 73312 | 1.12 | 0.003331 |
Target: 5'- aCCGAUCCACUCUGCACAAACACCCCAg -3' miRNA: 3'- -GGCUAGGUGAGACGUGUUUGUGGGGU- -5' |
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21015 | 3' | -52.9 | NC_004735.1 | + | 6549 | 0.75 | 0.566992 |
Target: 5'- uCgGAaCCGCUCUGCAUGGgaguuuuuacguGCGCCCCAu -3' miRNA: 3'- -GgCUaGGUGAGACGUGUU------------UGUGGGGU- -5' |
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21015 | 3' | -52.9 | NC_004735.1 | + | 11379 | 0.7 | 0.819518 |
Target: 5'- uUCGAUCUACUCccauagGCGCAaaagucagaAACACCCg- -3' miRNA: 3'- -GGCUAGGUGAGa-----CGUGU---------UUGUGGGgu -5' |
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21015 | 3' | -52.9 | NC_004735.1 | + | 57775 | 0.7 | 0.819518 |
Target: 5'- cUCGAaCCACUCUGCAUGAu--CCUCAu -3' miRNA: 3'- -GGCUaGGUGAGACGUGUUuguGGGGU- -5' |
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21015 | 3' | -52.9 | NC_004735.1 | + | 23147 | 0.7 | 0.836838 |
Target: 5'- -aGAUCaCGCUaaGCGCAAGCguauACCCCGa -3' miRNA: 3'- ggCUAG-GUGAgaCGUGUUUG----UGGGGU- -5' |
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21015 | 3' | -52.9 | NC_004735.1 | + | 114662 | 0.7 | 0.851754 |
Target: 5'- gCCGGgggaauauaaaCAUcgUCgUGCACAAACACCCCGg -3' miRNA: 3'- -GGCUag---------GUG--AG-ACGUGUUUGUGGGGU- -5' |
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21015 | 3' | -52.9 | NC_004735.1 | + | 93221 | 0.68 | 0.90423 |
Target: 5'- uCCGGUacCCAUuucgUCUGCAaugaGAGCACCCgGa -3' miRNA: 3'- -GGCUA--GGUG----AGACGUg---UUUGUGGGgU- -5' |
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21015 | 3' | -52.9 | NC_004735.1 | + | 72977 | 0.67 | 0.938295 |
Target: 5'- aCGAugUUCGCUUUGCuACuuccCACCCCAa -3' miRNA: 3'- gGCU--AGGUGAGACG-UGuuu-GUGGGGU- -5' |
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21015 | 3' | -52.9 | NC_004735.1 | + | 44622 | 0.67 | 0.953585 |
Target: 5'- gCUGGUCCuCUCUaaggagcagcgagaaGCACuuGACACCaCCAu -3' miRNA: 3'- -GGCUAGGuGAGA---------------CGUGu-UUGUGG-GGU- -5' |
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21015 | 3' | -52.9 | NC_004735.1 | + | 9521 | 0.66 | 0.963387 |
Target: 5'- uCCGG-CUcCUCUGUACA-ACAUCCCc -3' miRNA: 3'- -GGCUaGGuGAGACGUGUuUGUGGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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