miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21017 3' -52.8 NC_004735.1 + 29069 0.66 0.944663
Target:  5'- uGCAAGAGaaGCCGgAACCGUACgcaUUCc -3'
miRNA:   3'- -UGUUUUCcaCGGCgUUGGCGUGg--AAG- -5'
21017 3' -52.8 NC_004735.1 + 48517 0.67 0.939871
Target:  5'- ----cGGGUGuuGUAaauuACCGCAUUUUCa -3'
miRNA:   3'- uguuuUCCACggCGU----UGGCGUGGAAG- -5'
21017 3' -52.8 NC_004735.1 + 104932 0.67 0.934821
Target:  5'- aGCGAuAGaUGuuGUAGCCGUuCCUUCu -3'
miRNA:   3'- -UGUUuUCcACggCGUUGGCGuGGAAG- -5'
21017 3' -52.8 NC_004735.1 + 54444 0.68 0.899038
Target:  5'- -aAAAAGGUGCaCG-GAUCGgACCUUCu -3'
miRNA:   3'- ugUUUUCCACG-GCgUUGGCgUGGAAG- -5'
21017 3' -52.8 NC_004735.1 + 56591 0.68 0.892173
Target:  5'- cGCAAGGcuuguguucauGGUGCgCGUGagagacGCCGCACCUUUc -3'
miRNA:   3'- -UGUUUU-----------CCACG-GCGU------UGGCGUGGAAG- -5'
21017 3' -52.8 NC_004735.1 + 56766 0.68 0.892173
Target:  5'- -uGAAAGGUGCgGCGucucucACgCGCACCa-- -3'
miRNA:   3'- ugUUUUCCACGgCGU------UG-GCGUGGaag -5'
21017 3' -52.8 NC_004735.1 + 11051 0.68 0.891472
Target:  5'- gGCAAuGGGUGCUGCAGugcucucCCGCAU--UCa -3'
miRNA:   3'- -UGUUuUCCACGGCGUU-------GGCGUGgaAG- -5'
21017 3' -52.8 NC_004735.1 + 65422 0.68 0.877697
Target:  5'- gAUAccGGGUGCUGCAuaucCCGCcCUUUCa -3'
miRNA:   3'- -UGUuuUCCACGGCGUu---GGCGuGGAAG- -5'
21017 3' -52.8 NC_004735.1 + 15564 0.69 0.870097
Target:  5'- -gGAAAGGcGCCGCuuCUGaCGCCUUg -3'
miRNA:   3'- ugUUUUCCaCGGCGuuGGC-GUGGAAg -5'
21017 3' -52.8 NC_004735.1 + 83292 0.73 0.648262
Target:  5'- -uGGAAGGUGCgGUuGCgGCACCUUUu -3'
miRNA:   3'- ugUUUUCCACGgCGuUGgCGUGGAAG- -5'
21017 3' -52.8 NC_004735.1 + 58500 0.74 0.605454
Target:  5'- cGCAAAgcGGGUGuUCGcCAGCCGCGCCa-- -3'
miRNA:   3'- -UGUUU--UCCAC-GGC-GUUGGCGUGGaag -5'
21017 3' -52.8 NC_004735.1 + 83135 1.08 0.004508
Target:  5'- uACAAAAGGUGCCGCAACCGCACCUUCc -3'
miRNA:   3'- -UGUUUUCCACGGCGUUGGCGUGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.