miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21019 3' -48.3 NC_004735.1 + 127204 0.66 0.998698
Target:  5'- ---cGCUGGCGGguAAcuuCGUcAAUGACg -3'
miRNA:   3'- guuaUGGCCGCCguUU---GCAuUUGCUG- -5'
21019 3' -48.3 NC_004735.1 + 61569 0.66 0.998091
Target:  5'- aGAUGaacCCGGCGGCGGugGUAc----- -3'
miRNA:   3'- gUUAU---GGCCGCCGUUugCAUuugcug -5'
21019 3' -48.3 NC_004735.1 + 66659 0.67 0.997708
Target:  5'- ---aACCGGUGGCAuucuGACG--GAUGAUc -3'
miRNA:   3'- guuaUGGCCGCCGU----UUGCauUUGCUG- -5'
21019 3' -48.3 NC_004735.1 + 105870 0.67 0.996155
Target:  5'- -uGUACUGGCgcuuuuugcGGUAuuCGUGGACGAa -3'
miRNA:   3'- guUAUGGCCG---------CCGUuuGCAUUUGCUg -5'
21019 3' -48.3 NC_004735.1 + 60950 0.67 0.995759
Target:  5'- ---cACCGGUGGUcuugaagaauugGAGCGUAAugauugccaccucuuGCGGCu -3'
miRNA:   3'- guuaUGGCCGCCG------------UUUGCAUU---------------UGCUG- -5'
21019 3' -48.3 NC_004735.1 + 25462 0.67 0.995477
Target:  5'- --uUGCCGaagaGGUGAGCGgGAACGACa -3'
miRNA:   3'- guuAUGGCcg--CCGUUUGCaUUUGCUG- -5'
21019 3' -48.3 NC_004735.1 + 34283 0.68 0.992838
Target:  5'- ---aGCCGGUGGC-GGCGgucuuuuCGACa -3'
miRNA:   3'- guuaUGGCCGCCGuUUGCauuu---GCUG- -5'
21019 3' -48.3 NC_004735.1 + 53835 0.69 0.989096
Target:  5'- ---cACCGGUGGUAAAUGUAu-CGuCa -3'
miRNA:   3'- guuaUGGCCGCCGUUUGCAUuuGCuG- -5'
21019 3' -48.3 NC_004735.1 + 61543 0.69 0.985855
Target:  5'- aCGAUACaGGCGaGCAgaaaAACGcuGACGACa -3'
miRNA:   3'- -GUUAUGgCCGC-CGU----UUGCauUUGCUG- -5'
21019 3' -48.3 NC_004735.1 + 44730 0.69 0.983981
Target:  5'- --cUGCaUGGCGGCAAACGUuuGugGGa -3'
miRNA:   3'- guuAUG-GCCGCCGUUUGCAu-UugCUg -5'
21019 3' -48.3 NC_004735.1 + 123180 0.69 0.981924
Target:  5'- gAGUAgCGaCGGCAAGCGgAAGCGAg -3'
miRNA:   3'- gUUAUgGCcGCCGUUUGCaUUUGCUg -5'
21019 3' -48.3 NC_004735.1 + 538 0.71 0.968575
Target:  5'- ----cCCGGCGGCAA----GAGCGGCa -3'
miRNA:   3'- guuauGGCCGCCGUUugcaUUUGCUG- -5'
21019 3' -48.3 NC_004735.1 + 17894 0.71 0.965577
Target:  5'- cCAAUGCCGGaucgcacccaaauaaGGCAuAUGUGuauuACGACu -3'
miRNA:   3'- -GUUAUGGCCg--------------CCGUuUGCAUu---UGCUG- -5'
21019 3' -48.3 NC_004735.1 + 2368 0.71 0.961646
Target:  5'- ----cCCGGUGGCGAugGUAGAUa-- -3'
miRNA:   3'- guuauGGCCGCCGUUugCAUUUGcug -5'
21019 3' -48.3 NC_004735.1 + 56292 0.77 0.768745
Target:  5'- ------aGGCGGCAAGCGUAGaagGCGGCu -3'
miRNA:   3'- guuauggCCGCCGUUUGCAUU---UGCUG- -5'
21019 3' -48.3 NC_004735.1 + 53971 0.78 0.717042
Target:  5'- ---cACCGGUGGCAAGCGUcuGCuGCa -3'
miRNA:   3'- guuaUGGCCGCCGUUUGCAuuUGcUG- -5'
21019 3' -48.3 NC_004735.1 + 84715 1.11 0.009995
Target:  5'- gCAAUACCGGCGGCAAACGUAAACGACa -3'
miRNA:   3'- -GUUAUGGCCGCCGUUUGCAUUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.