Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2102 | 3' | -56.6 | NC_001348.1 | + | 120203 | 0.66 | 0.86962 |
Target: 5'- uCAgGCGGCACGAaGCCCgCGauaACCc -3' miRNA: 3'- -GUgUGCUGUGCUaUGGGgGCgcgUGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 122558 | 0.7 | 0.669334 |
Target: 5'- --gGCGGCGCGGauCUCCCGCGguCACCc -3' miRNA: 3'- gugUGCUGUGCUauGGGGGCGC--GUGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 123895 | 0.68 | 0.758403 |
Target: 5'- gAgGCGGCAC-AUAgCCaCCGCGCAgCa -3' miRNA: 3'- gUgUGCUGUGcUAUgGG-GGCGCGUgG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 124553 | 0.66 | 0.859864 |
Target: 5'- cCAC-CGACACGAUGCucaCCCCaaaggaugaccccgGUGCGuCCc -3' miRNA: 3'- -GUGuGCUGUGCUAUG---GGGG--------------CGCGU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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