Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2102 | 3' | -56.6 | NC_001348.1 | + | 119204 | 0.71 | 0.577745 |
Target: 5'- gAUACGuCGCGggGCCCCgGCGCGu- -3' miRNA: 3'- gUGUGCuGUGCuaUGGGGgCGCGUgg -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 93465 | 0.69 | 0.709605 |
Target: 5'- gUAUACgGugGgGGUGCCUCCGCGC-CUg -3' miRNA: 3'- -GUGUG-CugUgCUAUGGGGGCGCGuGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 105897 | 0.68 | 0.758403 |
Target: 5'- gAgGCGGCAC-AUAgCCaCCGCGCAgCa -3' miRNA: 3'- gUgUGCUGUGcUAUgGG-GGCGCGUgG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 52045 | 0.68 | 0.767867 |
Target: 5'- cCACACGA-GCGGUauugACCCCagaGCGUuuaGCCu -3' miRNA: 3'- -GUGUGCUgUGCUA----UGGGGg--CGCG---UGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 39712 | 0.68 | 0.785508 |
Target: 5'- cCACA-GACgccucccccauaaACGcgGCCaCCCGCGCGCg -3' miRNA: 3'- -GUGUgCUG-------------UGCuaUGG-GGGCGCGUGg -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 124553 | 0.66 | 0.859864 |
Target: 5'- cCAC-CGACACGAUGCucaCCCCaaaggaugaccccgGUGCGuCCc -3' miRNA: 3'- -GUGuGCUGUGCUAUG---GGGG--------------CGCGU-GG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 75200 | 0.66 | 0.862147 |
Target: 5'- aCACACaGAgGCu-UGCCCUCGUGCAauuCCu -3' miRNA: 3'- -GUGUG-CUgUGcuAUGGGGGCGCGU---GG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 120203 | 0.66 | 0.86962 |
Target: 5'- uCAgGCGGCACGAaGCCCgCGauaACCc -3' miRNA: 3'- -GUgUGCUGUGCUaUGGGgGCgcgUGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 107234 | 0.7 | 0.669334 |
Target: 5'- --gGCGGCGCGGauCUCCCGCGguCACCc -3' miRNA: 3'- gugUGCUGUGCUauGGGGGCGC--GUGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 118541 | 0.72 | 0.518068 |
Target: 5'- gACGuCGACACGA-AgCCCCGCGCcggcaugauauACCg -3' miRNA: 3'- gUGU-GCUGUGCUaUgGGGGCGCG-----------UGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 118280 | 1.12 | 0.001501 |
Target: 5'- gCACACGACACGAUACCCCCGCGCACCa -3' miRNA: 3'- -GUGUGCUGUGCUAUGGGGGCGCGUGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 105239 | 0.66 | 0.859864 |
Target: 5'- cCAC-CGACACGAUGCucaCCCCaaaggaugaccccgGUGCGuCCc -3' miRNA: 3'- -GUGuGCUGUGCUAUG---GGGG--------------CGCGU-GG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 41890 | 0.72 | 0.557633 |
Target: 5'- gACACGGCAgcCGAUGCCCCCcaaaCG-ACCu -3' miRNA: 3'- gUGUGCUGU--GCUAUGGGGGc---GCgUGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 110588 | 0.71 | 0.577745 |
Target: 5'- gAUACGuCGCGggGCCCCgGCGCGu- -3' miRNA: 3'- gUGUGCuGUGCuaUGGGGgCGCGUgg -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 47717 | 0.7 | 0.659169 |
Target: 5'- aCACACGACGCcu--CCgCCGCaGCACg -3' miRNA: 3'- -GUGUGCUGUGcuauGGgGGCG-CGUGg -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 122558 | 0.7 | 0.669334 |
Target: 5'- --gGCGGCGCGGauCUCCCGCGguCACCc -3' miRNA: 3'- gugUGCUGUGCUauGGGGGCGC--GUGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 48206 | 0.69 | 0.719532 |
Target: 5'- aACAUGGCA-GAaAUCCCUGCGCAacuCCa -3' miRNA: 3'- gUGUGCUGUgCUaUGGGGGCGCGU---GG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 105901 | 0.66 | 0.876882 |
Target: 5'- cCGCGCGgguacACACGGUGuaugcgacguuCCCaCCGCgGCACa -3' miRNA: 3'- -GUGUGC-----UGUGCUAU-----------GGG-GGCG-CGUGg -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 59838 | 0.66 | 0.876882 |
Target: 5'- aCACACG-C-CGGUACaauuaCCCCGCGacgguaCACCc -3' miRNA: 3'- -GUGUGCuGuGCUAUG-----GGGGCGC------GUGG- -5' |
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2102 | 3' | -56.6 | NC_001348.1 | + | 123895 | 0.68 | 0.758403 |
Target: 5'- gAgGCGGCAC-AUAgCCaCCGCGCAgCa -3' miRNA: 3'- gUgUGCUGUGcUAUgGG-GGCGCGUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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