miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21021 5' -50.6 NC_004735.1 + 99916 0.66 0.98792
Target:  5'- cGCGuugAUAGcUCAGaCAGC-AGCGGGuGCu -3'
miRNA:   3'- -UGUua-UAUC-AGUC-GUCGcUUGCCC-CG- -5'
21021 5' -50.6 NC_004735.1 + 85380 0.66 0.986276
Target:  5'- ----gAUAGUCAGau-CGggUGGGGUg -3'
miRNA:   3'- uguuaUAUCAGUCgucGCuuGCCCCG- -5'
21021 5' -50.6 NC_004735.1 + 45588 0.66 0.986276
Target:  5'- aGCGGUGUugcauGGUCAGCGcCGAACugagacggaGGGCa -3'
miRNA:   3'- -UGUUAUA-----UCAGUCGUcGCUUGc--------CCCG- -5'
21021 5' -50.6 NC_004735.1 + 9437 0.67 0.982478
Target:  5'- gACGuuuuUAGUCucuccAGCccuuGGCGAcCGGGGCg -3'
miRNA:   3'- -UGUuau-AUCAG-----UCG----UCGCUuGCCCCG- -5'
21021 5' -50.6 NC_004735.1 + 27837 0.67 0.980306
Target:  5'- uACGAUAuUAGaaGGUAGCGuAACacugGGGGCg -3'
miRNA:   3'- -UGUUAU-AUCagUCGUCGC-UUG----CCCCG- -5'
21021 5' -50.6 NC_004735.1 + 45055 0.68 0.955227
Target:  5'- gGCAcgGUGuUCAGCGGCGAccagauagaGCGGGu- -3'
miRNA:   3'- -UGUuaUAUcAGUCGUCGCU---------UGCCCcg -5'
21021 5' -50.6 NC_004735.1 + 110160 0.7 0.907966
Target:  5'- -gGAUGUAGUaaucggaGGCGGUucacuugggGAugGGGGCg -3'
miRNA:   3'- ugUUAUAUCAg------UCGUCG---------CUugCCCCG- -5'
21021 5' -50.6 NC_004735.1 + 89458 0.71 0.887488
Target:  5'- aGCGug--AGUCGGCGGUuguuuuuauGCGGGGCg -3'
miRNA:   3'- -UGUuauaUCAGUCGUCGcu-------UGCCCCG- -5'
21021 5' -50.6 NC_004735.1 + 101161 0.73 0.784888
Target:  5'- ---------aCAGCAGCGGugGGGGUg -3'
miRNA:   3'- uguuauaucaGUCGUCGCUugCCCCG- -5'
21021 5' -50.6 NC_004735.1 + 92379 1.12 0.004748
Target:  5'- aACAAUAUAGUCAGCAGCGAACGGGGCu -3'
miRNA:   3'- -UGUUAUAUCAGUCGUCGCUUGCCCCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.