Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21021 | 5' | -50.6 | NC_004735.1 | + | 99916 | 0.66 | 0.98792 |
Target: 5'- cGCGuugAUAGcUCAGaCAGC-AGCGGGuGCu -3' miRNA: 3'- -UGUua-UAUC-AGUC-GUCGcUUGCCC-CG- -5' |
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21021 | 5' | -50.6 | NC_004735.1 | + | 85380 | 0.66 | 0.986276 |
Target: 5'- ----gAUAGUCAGau-CGggUGGGGUg -3' miRNA: 3'- uguuaUAUCAGUCgucGCuuGCCCCG- -5' |
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21021 | 5' | -50.6 | NC_004735.1 | + | 45588 | 0.66 | 0.986276 |
Target: 5'- aGCGGUGUugcauGGUCAGCGcCGAACugagacggaGGGCa -3' miRNA: 3'- -UGUUAUA-----UCAGUCGUcGCUUGc--------CCCG- -5' |
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21021 | 5' | -50.6 | NC_004735.1 | + | 9437 | 0.67 | 0.982478 |
Target: 5'- gACGuuuuUAGUCucuccAGCccuuGGCGAcCGGGGCg -3' miRNA: 3'- -UGUuau-AUCAG-----UCG----UCGCUuGCCCCG- -5' |
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21021 | 5' | -50.6 | NC_004735.1 | + | 27837 | 0.67 | 0.980306 |
Target: 5'- uACGAUAuUAGaaGGUAGCGuAACacugGGGGCg -3' miRNA: 3'- -UGUUAU-AUCagUCGUCGC-UUG----CCCCG- -5' |
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21021 | 5' | -50.6 | NC_004735.1 | + | 45055 | 0.68 | 0.955227 |
Target: 5'- gGCAcgGUGuUCAGCGGCGAccagauagaGCGGGu- -3' miRNA: 3'- -UGUuaUAUcAGUCGUCGCU---------UGCCCcg -5' |
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21021 | 5' | -50.6 | NC_004735.1 | + | 110160 | 0.7 | 0.907966 |
Target: 5'- -gGAUGUAGUaaucggaGGCGGUucacuugggGAugGGGGCg -3' miRNA: 3'- ugUUAUAUCAg------UCGUCG---------CUugCCCCG- -5' |
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21021 | 5' | -50.6 | NC_004735.1 | + | 89458 | 0.71 | 0.887488 |
Target: 5'- aGCGug--AGUCGGCGGUuguuuuuauGCGGGGCg -3' miRNA: 3'- -UGUuauaUCAGUCGUCGcu-------UGCCCCG- -5' |
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21021 | 5' | -50.6 | NC_004735.1 | + | 101161 | 0.73 | 0.784888 |
Target: 5'- ---------aCAGCAGCGGugGGGGUg -3' miRNA: 3'- uguuauaucaGUCGUCGCUugCCCCG- -5' |
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21021 | 5' | -50.6 | NC_004735.1 | + | 92379 | 1.12 | 0.004748 |
Target: 5'- aACAAUAUAGUCAGCAGCGAACGGGGCu -3' miRNA: 3'- -UGUUAUAUCAGUCGUCGCUUGCCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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