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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21022 | 3' | -55.5 | NC_004735.1 | + | 122629 | 0.66 | 0.883834 |
Target: 5'- -aCCGCCGUUGCCaUCucCCAGAa--- -3' miRNA: 3'- gaGGCGGUAACGG-AGucGGUCUaguc -5' |
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21022 | 3' | -55.5 | NC_004735.1 | + | 53029 | 0.71 | 0.599657 |
Target: 5'- -aCCGCCAUUuCCUCAGCCGauUCGa -3' miRNA: 3'- gaGGCGGUAAcGGAGUCGGUcuAGUc -5' |
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21022 | 3' | -55.5 | NC_004735.1 | + | 92474 | 1.08 | 0.002577 |
Target: 5'- aCUCCGCCAUUGCCUCAGCCAGAUCAGc -3' miRNA: 3'- -GAGGCGGUAACGGAGUCGGUCUAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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