miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21023 3' -51.4 NC_004735.1 + 100838 0.66 0.972606
Target:  5'- aAAGCAuUUUCGCGuuucuuggacccgguGCCGCGCuuuacGCu -3'
miRNA:   3'- cUUCGU-AAAGCGCuu-------------CGGCGCGuu---CG- -5'
21023 3' -51.4 NC_004735.1 + 62862 0.67 0.970532
Target:  5'- aAGGUAUUUCuuUGAgccagaagguaAGCCGCGCgAAGCg -3'
miRNA:   3'- cUUCGUAAAGc-GCU-----------UCGGCGCG-UUCG- -5'
21023 3' -51.4 NC_004735.1 + 127416 0.67 0.970532
Target:  5'- gGAAGCugcUUCGUGuccgacGCCGCGCcguauGCg -3'
miRNA:   3'- -CUUCGua-AAGCGCuu----CGGCGCGuu---CG- -5'
21023 3' -51.4 NC_004735.1 + 26700 0.67 0.967377
Target:  5'- cGAAGCA--UCGgaGAAGUCGaGCGAGUc -3'
miRNA:   3'- -CUUCGUaaAGCg-CUUCGGCgCGUUCG- -5'
21023 3' -51.4 NC_004735.1 + 112262 0.67 0.967377
Target:  5'- uGAGCAaggucaagCGUGAAGCCGgGCAc-- -3'
miRNA:   3'- cUUCGUaaa-----GCGCUUCGGCgCGUucg -5'
21023 3' -51.4 NC_004735.1 + 12246 0.67 0.963639
Target:  5'- uGGAGaagUUCgGCGAGuauuuccGCCaGCGCAAGCu -3'
miRNA:   3'- -CUUCguaAAG-CGCUU-------CGG-CGCGUUCG- -5'
21023 3' -51.4 NC_004735.1 + 91308 0.68 0.947552
Target:  5'- ---cCGUUUUGCGGAGaaucgccCCGCGaCAGGCa -3'
miRNA:   3'- cuucGUAAAGCGCUUC-------GGCGC-GUUCG- -5'
21023 3' -51.4 NC_004735.1 + 91746 0.7 0.882628
Target:  5'- uGAAGCccacauugUUGCGcuGAGCCGCGCGgucuuuauccAGCg -3'
miRNA:   3'- -CUUCGuaa-----AGCGC--UUCGGCGCGU----------UCG- -5'
21023 3' -51.4 NC_004735.1 + 34058 0.72 0.807193
Target:  5'- -uGGCgAUUcgaUCGgGGAGCCGCGCucGCc -3'
miRNA:   3'- cuUCG-UAA---AGCgCUUCGGCGCGuuCG- -5'
21023 3' -51.4 NC_004735.1 + 58497 0.75 0.621567
Target:  5'- aAAGCGggugUUCGCc-AGCCGCGCcAGCg -3'
miRNA:   3'- cUUCGUa---AAGCGcuUCGGCGCGuUCG- -5'
21023 3' -51.4 NC_004735.1 + 105285 1.13 0.003309
Target:  5'- gGAAGCAUUUCGCGAAGCCGCGCAAGCa -3'
miRNA:   3'- -CUUCGUAAAGCGCUUCGGCGCGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.