miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21024 3' -46.8 NC_004735.1 + 114456 0.66 0.999906
Target:  5'- cGGCGGCGUaaaUGuAAUAUCCcucAGggGu- -3'
miRNA:   3'- cCUGCCGCAg--AC-UUAUAGG---UCuuUuc -5'
21024 3' -46.8 NC_004735.1 + 79897 0.66 0.999732
Target:  5'- gGGAgCGGCGUgUgGGAUAUUCuGAAAGc -3'
miRNA:   3'- -CCU-GCCGCAgA-CUUAUAGGuCUUUUc -5'
21024 3' -46.8 NC_004735.1 + 70967 0.67 0.999165
Target:  5'- -aGCGGUaGUCUgGAAUAUCCGGu-AAGa -3'
miRNA:   3'- ccUGCCG-CAGA-CUUAUAGGUCuuUUC- -5'
21024 3' -46.8 NC_004735.1 + 38870 0.68 0.998972
Target:  5'- cGAgGGCGUCUauuacuguccgGAGcAUCCAGAGGu- -3'
miRNA:   3'- cCUgCCGCAGA-----------CUUaUAGGUCUUUuc -5'
21024 3' -46.8 NC_004735.1 + 115624 0.68 0.998469
Target:  5'- cGGAagcucaGGCGUCUGAagaAUAUCCGc----- -3'
miRNA:   3'- -CCUg-----CCGCAGACU---UAUAGGUcuuuuc -5'
21024 3' -46.8 NC_004735.1 + 1314 0.68 0.998469
Target:  5'- uGACGGUGg--GAgGUAUCCAGggGGu -3'
miRNA:   3'- cCUGCCGCagaCU-UAUAGGUCuuUUc -5'
21024 3' -46.8 NC_004735.1 + 17820 0.68 0.998148
Target:  5'- aGAaaaGGCGUCgUGAuaAUAUCCGGAu--- -3'
miRNA:   3'- cCUg--CCGCAG-ACU--UAUAGGUCUuuuc -5'
21024 3' -46.8 NC_004735.1 + 100240 0.69 0.997773
Target:  5'- aGACGGCa--UGAAUAUUCuGAAAGGu -3'
miRNA:   3'- cCUGCCGcagACUUAUAGGuCUUUUC- -5'
21024 3' -46.8 NC_004735.1 + 125082 0.69 0.995577
Target:  5'- aGGGCGGUaGUCUuuugGUUCGGGGAAGg -3'
miRNA:   3'- -CCUGCCG-CAGAcuuaUAGGUCUUUUC- -5'
21024 3' -46.8 NC_004735.1 + 102906 0.78 0.81667
Target:  5'- aGACGGCGUCaagGGAUAUUCAGGuauGGAGu -3'
miRNA:   3'- cCUGCCGCAGa--CUUAUAGGUCU---UUUC- -5'
21024 3' -46.8 NC_004735.1 + 120421 1.12 0.013515
Target:  5'- cGGACGGCGUCUGAAUAUCCAGAAAAGc -3'
miRNA:   3'- -CCUGCCGCAGACUUAUAGGUCUUUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.