miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21026	3'	-52	NC_004735.1	+	112124	0.66	0.976915
	Target:  5'- -uGggGAUGuuGGUuuuuGCCGCCAaCGUc -3' miRNA:   3'- auCuuCUAUggCCA----UGGUGGUaGCGc -5'
21026	3'	-52	NC_004735.1	+	42088	0.67	0.964111
	Target:  5'- cAGAGGAUccuuacuacaaaccACCGGUuuCCACCggCGgGa -3' miRNA:   3'- aUCUUCUA--------------UGGCCAu-GGUGGuaGCgC- -5'
21026	3'	-52	NC_004735.1	+	126675	0.67	0.95789
	Target:  5'- cGGuGGucagACCGGUACCACCGUagaccgaGCc -3' miRNA:   3'- aUCuUCua--UGGCCAUGGUGGUAg------CGc -5'
21026	3'	-52	NC_004735.1	+	60927	0.67	0.949673
	Target:  5'- cAGA--AUAUCGGUACCACCAugaUCGa- -3' miRNA:   3'- aUCUucUAUGGCCAUGGUGGU---AGCgc -5'
21026	3'	-52	NC_004735.1	+	72487	0.68	0.94519
	Target:  5'- -cGAAGGUACCGGUcuggaaaucgaGCaGCCGuUCGCu -3' miRNA:   3'- auCUUCUAUGGCCA-----------UGgUGGU-AGCGc -5'
21026	3'	-52	NC_004735.1	+	11067	0.68	0.924697
	Target:  5'- cAGAuucGGAUGgaaCGGUuucguuuCCACCAUCGCa -3' miRNA:   3'- aUCU---UCUAUg--GCCAu------GGUGGUAGCGc -5'
21026	3'	-52	NC_004735.1	+	93019	0.7	0.886245
	Target:  5'- gGGAAGGUgcucuuucuuACCGGUACUcCUAUCGUc -3' miRNA:   3'- aUCUUCUA----------UGGCCAUGGuGGUAGCGc -5'
21026	3'	-52	NC_004735.1	+	58813	0.7	0.847512
	Target:  5'- gUGGAAGA--CCGGUaACCACCAUUucauuuccgGCGg -3' miRNA:   3'- -AUCUUCUauGGCCA-UGGUGGUAG---------CGC- -5'
21026	3'	-52	NC_004735.1	+	644	0.71	0.839102
	Target:  5'- cGGAGGAUAUUuugcugGGUGCCGCCAUgauuggaggCGCGc -3' miRNA:   3'- aUCUUCUAUGG------CCAUGGUGGUA---------GCGC- -5'
21026	3'	-52	NC_004735.1	+	125705	1.09	0.005889
	Target:  5'- aUAGAAGAUACCGGUACCACCAUCGCGg -3' miRNA:   3'- -AUCUUCUAUGGCCAUGGUGGUAGCGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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