Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21026 | 5' | -57.6 | NC_004735.1 | + | 84946 | 0.66 | 0.81076 |
|
Target: 5'- uUACuCCGGCGUAcauGGCuuuCCGGguUUGAg -3' miRNA: 3'- -AUG-GGCCGCAUu--UCG---GGCCguAGCUg -5' |
|||||||
| 21026 | 5' | -57.6 | NC_004735.1 | + | 39115 | 0.66 | 0.800945 |
|
Target: 5'- aACCCGGUGUAcuGCgaCCggguuggGGCGUCGGg -3' miRNA: 3'- aUGGGCCGCAUuuCG--GG-------CCGUAGCUg -5' |
|||||||
| 21026 | 5' | -57.6 | NC_004735.1 | + | 45380 | 0.67 | 0.735583 |
|
Target: 5'- uUACCCucGGCGau-AGCCCGGUcuaCGAUa -3' miRNA: 3'- -AUGGG--CCGCauuUCGGGCCGua-GCUG- -5' |
|||||||
| 21026 | 5' | -57.6 | NC_004735.1 | + | 127239 | 0.67 | 0.725677 |
|
Target: 5'- cACCCGGCuuucccgcaUAcGGCgCGGCGUCgGACa -3' miRNA: 3'- aUGGGCCGc--------AUuUCGgGCCGUAG-CUG- -5' |
|||||||
| 21026 | 5' | -57.6 | NC_004735.1 | + | 13561 | 0.68 | 0.695503 |
|
Target: 5'- aACCCGGag-AAAcCCCGGCAagcagCGACa -3' miRNA: 3'- aUGGGCCgcaUUUcGGGCCGUa----GCUG- -5' |
|||||||
| 21026 | 5' | -57.6 | NC_004735.1 | + | 28981 | 0.68 | 0.65456 |
|
Target: 5'- gGCuCCGGUG-GGAGCgCGGCG-CGGCg -3' miRNA: 3'- aUG-GGCCGCaUUUCGgGCCGUaGCUG- -5' |
|||||||
| 21026 | 5' | -57.6 | NC_004735.1 | + | 58367 | 0.69 | 0.644256 |
|
Target: 5'- uUGCgCGGgGUAAAGUgUGGUAUCGGg -3' miRNA: 3'- -AUGgGCCgCAUUUCGgGCCGUAGCUg -5' |
|||||||
| 21026 | 5' | -57.6 | NC_004735.1 | + | 127376 | 0.71 | 0.531977 |
|
Target: 5'- aGCCgGGUGaaGAAGCCCGuCAUUGACg -3' miRNA: 3'- aUGGgCCGCa-UUUCGGGCcGUAGCUG- -5' |
|||||||
| 21026 | 5' | -57.6 | NC_004735.1 | + | 125739 | 0.99 | 0.00783 |
|
Target: 5'- uUACCCGGCG-AAAGCCCGGCAUCGACu -3' miRNA: 3'- -AUGGGCCGCaUUUCGGGCCGUAGCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home