Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21027 | 3' | -58.8 | NC_004735.1 | + | 59482 | 0.66 | 0.789913 |
Target: 5'- uUGCCCGUGuaaaaguauuuuGCCGUaacccCGGUGGUCc- -3' miRNA: 3'- gGCGGGCAU------------CGGCAca---GCCACCAGuc -5' |
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21027 | 3' | -58.8 | NC_004735.1 | + | 110347 | 0.66 | 0.780932 |
Target: 5'- aCC-CCCGgaacAGCCGUGggaUUGGUGGUa-- -3' miRNA: 3'- -GGcGGGCa---UCGGCAC---AGCCACCAguc -5' |
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21027 | 3' | -58.8 | NC_004735.1 | + | 72523 | 0.7 | 0.536691 |
Target: 5'- aUCGCCCGUguuguaggaAGCCGUGagGGUGuUCGc -3' miRNA: 3'- -GGCGGGCA---------UCGGCACagCCACcAGUc -5' |
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21027 | 3' | -58.8 | NC_004735.1 | + | 126658 | 1.11 | 0.001222 |
Target: 5'- aCCGCCCGUAGCCGUGUCGGUGGUCAGa -3' miRNA: 3'- -GGCGGGCAUCGGCACAGCCACCAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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