miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2103 3' -54.3 NC_001348.1 + 22347 0.66 0.945418
Target:  5'- gGGGUUGAuCGUCGuuucGGGGuuAUGGCCAacauCCGu -3'
miRNA:   3'- -CCCAGUU-GCAGU----UCCU--UGCCGGU----GGC- -5'
2103 3' -54.3 NC_001348.1 + 6433 0.66 0.940832
Target:  5'- uGGGUCuuUGUUAGGGuuuaccACGGCCuuUGg -3'
miRNA:   3'- -CCCAGuuGCAGUUCCu-----UGCCGGugGC- -5'
2103 3' -54.3 NC_001348.1 + 63456 0.66 0.936005
Target:  5'- cGGGcCAugGuaUCGuacucugcAGGAACGGCUugUGu -3'
miRNA:   3'- -CCCaGUugC--AGU--------UCCUUGCCGGugGC- -5'
2103 3' -54.3 NC_001348.1 + 107616 0.67 0.919489
Target:  5'- cGGGcCAAgggcuucCGUCGGGcaucauGAGCGGCC-CCGa -3'
miRNA:   3'- -CCCaGUU-------GCAGUUC------CUUGCCGGuGGC- -5'
2103 3' -54.3 NC_001348.1 + 122176 0.67 0.919489
Target:  5'- cGGGcCAAgggcuucCGUCGGGcaucauGAGCGGCC-CCGa -3'
miRNA:   3'- -CCCaGUU-------GCAGUUC------CUUGCCGGuGGC- -5'
2103 3' -54.3 NC_001348.1 + 51555 0.67 0.908208
Target:  5'- -cGUCAGaaauguaacugcCGUCGcccgAGGAGCGGcCCACCu -3'
miRNA:   3'- ccCAGUU------------GCAGU----UCCUUGCC-GGUGGc -5'
2103 3' -54.3 NC_001348.1 + 334 0.67 0.90759
Target:  5'- gGGGUCccAgGUCGgcGGGAguagugcACGGUCGCCa -3'
miRNA:   3'- -CCCAGu-UgCAGU--UCCU-------UGCCGGUGGc -5'
2103 3' -54.3 NC_001348.1 + 14769 0.67 0.90256
Target:  5'- uGGGUUuuaugacguguccuuACGUgcugugggcCAAGGAACGGCCAUUu -3'
miRNA:   3'- -CCCAGu--------------UGCA---------GUUCCUUGCCGGUGGc -5'
2103 3' -54.3 NC_001348.1 + 51754 0.67 0.895395
Target:  5'- cGGUUGGCGUCuauu-AUGGCCGCUGa -3'
miRNA:   3'- cCCAGUUGCAGuuccuUGCCGGUGGC- -5'
2103 3' -54.3 NC_001348.1 + 382 0.68 0.859327
Target:  5'- gGGGUCGcaACGUCAuccaugcugGGGGACgacgugagGGUgACCGg -3'
miRNA:   3'- -CCCAGU--UGCAGU---------UCCUUG--------CCGgUGGC- -5'
2103 3' -54.3 NC_001348.1 + 113291 1.12 0.002491
Target:  5'- cGGGUCAACGUCAAGGAACGGCCACCGa -3'
miRNA:   3'- -CCCAGUUGCAGUUCCUUGCCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.