Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2103 | 3' | -54.3 | NC_001348.1 | + | 113291 | 1.12 | 0.002491 |
Target: 5'- cGGGUCAACGUCAAGGAACGGCCACCGa -3' miRNA: 3'- -CCCAGUUGCAGUUCCUUGCCGGUGGC- -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 382 | 0.68 | 0.859327 |
Target: 5'- gGGGUCGcaACGUCAuccaugcugGGGGACgacgugagGGUgACCGg -3' miRNA: 3'- -CCCAGU--UGCAGU---------UCCUUG--------CCGgUGGC- -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 14769 | 0.67 | 0.90256 |
Target: 5'- uGGGUUuuaugacguguccuuACGUgcugugggcCAAGGAACGGCCAUUu -3' miRNA: 3'- -CCCAGu--------------UGCA---------GUUCCUUGCCGGUGGc -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 51555 | 0.67 | 0.908208 |
Target: 5'- -cGUCAGaaauguaacugcCGUCGcccgAGGAGCGGcCCACCu -3' miRNA: 3'- ccCAGUU------------GCAGU----UCCUUGCC-GGUGGc -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 107616 | 0.67 | 0.919489 |
Target: 5'- cGGGcCAAgggcuucCGUCGGGcaucauGAGCGGCC-CCGa -3' miRNA: 3'- -CCCaGUU-------GCAGUUC------CUUGCCGGuGGC- -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 51754 | 0.67 | 0.895395 |
Target: 5'- cGGUUGGCGUCuauu-AUGGCCGCUGa -3' miRNA: 3'- cCCAGUUGCAGuuccuUGCCGGUGGC- -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 122176 | 0.67 | 0.919489 |
Target: 5'- cGGGcCAAgggcuucCGUCGGGcaucauGAGCGGCC-CCGa -3' miRNA: 3'- -CCCaGUU-------GCAGUUC------CUUGCCGGuGGC- -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 334 | 0.67 | 0.90759 |
Target: 5'- gGGGUCccAgGUCGgcGGGAguagugcACGGUCGCCa -3' miRNA: 3'- -CCCAGu-UgCAGU--UCCU-------UGCCGGUGGc -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 22347 | 0.66 | 0.945418 |
Target: 5'- gGGGUUGAuCGUCGuuucGGGGuuAUGGCCAacauCCGu -3' miRNA: 3'- -CCCAGUU-GCAGU----UCCU--UGCCGGU----GGC- -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 63456 | 0.66 | 0.936005 |
Target: 5'- cGGGcCAugGuaUCGuacucugcAGGAACGGCUugUGu -3' miRNA: 3'- -CCCaGUugC--AGU--------UCCUUGCCGGugGC- -5' |
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2103 | 3' | -54.3 | NC_001348.1 | + | 6433 | 0.66 | 0.940832 |
Target: 5'- uGGGUCuuUGUUAGGGuuuaccACGGCCuuUGg -3' miRNA: 3'- -CCCAGuuGCAGUUCCu-----UGCCGGugGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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