miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2103 5' -51.2 NC_001348.1 + 109458 0.66 0.986791
Target:  5'- cGgGUUGuuUCCACCCAUCCGg----- -3'
miRNA:   3'- uCgCAAUu-GGGUGGGUAGGCaacaug -5'
2103 5' -51.2 NC_001348.1 + 120334 0.66 0.986791
Target:  5'- cGgGUUGuuUCCACCCAUCCGg----- -3'
miRNA:   3'- uCgCAAUu-GGGUGGGUAGGCaacaug -5'
2103 5' -51.2 NC_001348.1 + 105353 0.66 0.976211
Target:  5'- aAGCGUguuCUCugUCGUCUGcgGUGCg -3'
miRNA:   3'- -UCGCAauuGGGugGGUAGGCaaCAUG- -5'
2103 5' -51.2 NC_001348.1 + 124439 0.66 0.976211
Target:  5'- aAGCGUguuCUCugUCGUCUGcgGUGCg -3'
miRNA:   3'- -UCGCAauuGGGugGGUAGGCaaCAUG- -5'
2103 5' -51.2 NC_001348.1 + 115398 0.67 0.973506
Target:  5'- cGCGaagaauCCCcCCCAcauUCCGUUGUAa -3'
miRNA:   3'- uCGCaauu--GGGuGGGU---AGGCAACAUg -5'
2103 5' -51.2 NC_001348.1 + 23466 0.68 0.94813
Target:  5'- aAGCGagGACCguCCC-UCCGUUGccGCg -3'
miRNA:   3'- -UCGCaaUUGGguGGGuAGGCAACa-UG- -5'
2103 5' -51.2 NC_001348.1 + 91593 0.69 0.916509
Target:  5'- --gGUUAcugGCCacaACCCAUCCGUuuccaUGUACa -3'
miRNA:   3'- ucgCAAU---UGGg--UGGGUAGGCA-----ACAUG- -5'
2103 5' -51.2 NC_001348.1 + 53568 0.7 0.903867
Target:  5'- cGCG-UGACCCA-UCAUCCGUUuUGCa -3'
miRNA:   3'- uCGCaAUUGGGUgGGUAGGCAAcAUG- -5'
2103 5' -51.2 NC_001348.1 + 72726 0.71 0.83475
Target:  5'- gGGCGUUAACCggaaGCCCAgcugUCGUUGa-- -3'
miRNA:   3'- -UCGCAAUUGGg---UGGGUa---GGCAACaug -5'
2103 5' -51.2 NC_001348.1 + 107310 0.74 0.697509
Target:  5'- cGGCGgu-ACCCGCCCGUCCcg-GUGg -3'
miRNA:   3'- -UCGCaauUGGGUGGGUAGGcaaCAUg -5'
2103 5' -51.2 NC_001348.1 + 122482 0.74 0.697509
Target:  5'- cGGCGgu-ACCCGCCCGUCCcg-GUGg -3'
miRNA:   3'- -UCGCaauUGGGUGGGUAGGcaaCAUg -5'
2103 5' -51.2 NC_001348.1 + 113333 1.11 0.004621
Target:  5'- gAGCGUUAACCCACCCAUCCGUUGUACa -3'
miRNA:   3'- -UCGCAAUUGGGUGGGUAGGCAACAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.