miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21035 5' -57.7 NC_004745.1 + 29062 0.66 0.408783
Target:  5'- uUCCCGUCAUaauuuacgguUGCUC-CACGCGCc -3'
miRNA:   3'- uAGGGCAGUAgu--------GCGGGaGUGUGCGa -5'
21035 5' -57.7 NC_004745.1 + 26983 0.66 0.374166
Target:  5'- cAUCUCGUCAcguguaaggggucuuUCGCGCCCgacggccUCGCgugGCGCg -3'
miRNA:   3'- -UAGGGCAGU---------------AGUGCGGG-------AGUG---UGCGa -5'
21035 5' -57.7 NC_004745.1 + 10283 0.67 0.327325
Target:  5'- -cCCCG-CGUCACGCUgUCaucugucaccacgGCGCGCa -3'
miRNA:   3'- uaGGGCaGUAGUGCGGgAG-------------UGUGCGa -5'
21035 5' -57.7 NC_004745.1 + 190 1.05 0.000495
Target:  5'- uAUCCCGUCAUCACGCCCUCACACGCUc -3'
miRNA:   3'- -UAGGGCAGUAGUGCGGGAGUGUGCGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.