miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21038 3' -54.1 NC_004745.1 + 18541 0.66 0.554063
Target:  5'- gAUGUgGCAGUGauauuucacUGGCCGcCAUCAGAAc -3'
miRNA:   3'- -UGCGgUGUCGU---------ACUGGCaGUAGUCUU- -5'
21038 3' -54.1 NC_004745.1 + 20989 0.67 0.519814
Target:  5'- uGCGCCggggacACAGCuUGACCGcCAguuaCAGGAu -3'
miRNA:   3'- -UGCGG------UGUCGuACUGGCaGUa---GUCUU- -5'
21038 3' -54.1 NC_004745.1 + 26903 0.68 0.464745
Target:  5'- cGCGCCAC-GCGaGGCCGUCGggCGcGAAa -3'
miRNA:   3'- -UGCGGUGuCGUaCUGGCAGUa-GU-CUU- -5'
21038 3' -54.1 NC_004745.1 + 19529 0.69 0.364727
Target:  5'- aGCGCCAuauuCAGCGUGACCGgCGUUg--- -3'
miRNA:   3'- -UGCGGU----GUCGUACUGGCaGUAGucuu -5'
21038 3' -54.1 NC_004745.1 + 4057 0.72 0.258564
Target:  5'- gACGCCGguCAGCAgu-UCGUCAUCAGGg -3'
miRNA:   3'- -UGCGGU--GUCGUacuGGCAGUAGUCUu -5'
21038 3' -54.1 NC_004745.1 + 909 0.74 0.195204
Target:  5'- aGCGCUACAGCAccACCGguaaggUCAUCAGAc -3'
miRNA:   3'- -UGCGGUGUCGUacUGGC------AGUAGUCUu -5'
21038 3' -54.1 NC_004745.1 + 5457 1.06 0.000824
Target:  5'- gACGCCACAGCAUGACCGUCAUCAGAAu -3'
miRNA:   3'- -UGCGGUGUCGUACUGGCAGUAGUCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.