miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21038 5' -58 NC_004745.1 + 16897 0.66 0.434458
Target:  5'- aGUcCCGGUACGCCGagaAUgCGCGGu -3'
miRNA:   3'- aCGaGGUCGUGCGGCaagUGgGUGCC- -5'
21038 5' -58 NC_004745.1 + 25114 0.66 0.42468
Target:  5'- aGCcCCAGgGCGauugacuucaCCa-UCACCCACGGg -3'
miRNA:   3'- aCGaGGUCgUGC----------GGcaAGUGGGUGCC- -5'
21038 5' -58 NC_004745.1 + 1368 0.66 0.415034
Target:  5'- aGCgaggaagCCAGcCACGCCGaccUCGCCUggGCGa -3'
miRNA:   3'- aCGa------GGUC-GUGCGGCa--AGUGGG--UGCc -5'
21038 5' -58 NC_004745.1 + 9707 0.66 0.414076
Target:  5'- ---cCCGGCagaacgaACGCCGUgucgaguucacCGCCCACGGc -3'
miRNA:   3'- acgaGGUCG-------UGCGGCAa----------GUGGGUGCC- -5'
21038 5' -58 NC_004745.1 + 29043 0.66 0.409311
Target:  5'- uUGCUCCA-CGCGCCag-CGCCUcaaguucccaucgcuGCGGc -3'
miRNA:   3'- -ACGAGGUcGUGCGGcaaGUGGG---------------UGCC- -5'
21038 5' -58 NC_004745.1 + 27955 0.66 0.390595
Target:  5'- gGCUCCAGauacggcagagauaACGCUGcgCAUCCuuCGGa -3'
miRNA:   3'- aCGAGGUCg-------------UGCGGCaaGUGGGu-GCC- -5'
21038 5' -58 NC_004745.1 + 18448 0.66 0.38692
Target:  5'- cUGCUCgguCAGCAucggUGCCG-UCAUgCGCGGc -3'
miRNA:   3'- -ACGAG---GUCGU----GCGGCaAGUGgGUGCC- -5'
21038 5' -58 NC_004745.1 + 1581 0.67 0.377831
Target:  5'- gUGUUCCAGCucguGCGCuCGUUcuaucCugCCGCGc -3'
miRNA:   3'- -ACGAGGUCG----UGCG-GCAA-----GugGGUGCc -5'
21038 5' -58 NC_004745.1 + 11617 0.67 0.342938
Target:  5'- gGCUCCAccaCACGCCGgauugCGCCgACa- -3'
miRNA:   3'- aCGAGGUc--GUGCGGCaa---GUGGgUGcc -5'
21038 5' -58 NC_004745.1 + 12020 0.73 0.150373
Target:  5'- gGCaUCCGGCACcggcaauuuGCCauuaccgUCACCCACGGc -3'
miRNA:   3'- aCG-AGGUCGUG---------CGGca-----AGUGGGUGCC- -5'
21038 5' -58 NC_004745.1 + 18175 0.81 0.038853
Target:  5'- uUGCUCCAGCcggucgACGCCGUUCACCUucucaaucauguugAUGGu -3'
miRNA:   3'- -ACGAGGUCG------UGCGGCAAGUGGG--------------UGCC- -5'
21038 5' -58 NC_004745.1 + 5408 1.09 0.000251
Target:  5'- cUGCUCCAGCACGCCGUUCACCCACGGc -3'
miRNA:   3'- -ACGAGGUCGUGCGGCAAGUGGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.