miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21039 3' -55.4 NC_004745.1 + 5856 0.66 0.511761
Target:  5'- -aCACCG-GCAaaACGUGgaCGCCCGAa-- -3'
miRNA:   3'- ugGUGGCuCGU--UGUAC--GCGGGCUauu -5'
21039 3' -55.4 NC_004745.1 + 9520 0.66 0.478917
Target:  5'- cGCUGCCGAgugcagaccgGCGGCAUGUGCaCUGAc-- -3'
miRNA:   3'- -UGGUGGCU----------CGUUGUACGCG-GGCUauu -5'
21039 3' -55.4 NC_004745.1 + 19089 0.66 0.468199
Target:  5'- aACCACCGcacagcuuaaccGGCAGCGUGaCGCgCUGGc-- -3'
miRNA:   3'- -UGGUGGC------------UCGUUGUAC-GCG-GGCUauu -5'
21039 3' -55.4 NC_004745.1 + 6518 0.66 0.454453
Target:  5'- cGCUACaGGGCGACAcgcucgacgccauuUGUGUCCGGUAu -3'
miRNA:   3'- -UGGUGgCUCGUUGU--------------ACGCGGGCUAUu -5'
21039 3' -55.4 NC_004745.1 + 19389 0.67 0.416574
Target:  5'- uACCGCCGccucGGCggAugAUGCGgCCGGUGc -3'
miRNA:   3'- -UGGUGGC----UCG--UugUACGCgGGCUAUu -5'
21039 3' -55.4 NC_004745.1 + 27089 0.68 0.396919
Target:  5'- -gCACCGGGCuuuuauUGCGCCgGAUGu -3'
miRNA:   3'- ugGUGGCUCGuugu--ACGCGGgCUAUu -5'
21039 3' -55.4 NC_004745.1 + 3825 0.68 0.396919
Target:  5'- cGCCACUGAGCAGCGccuCGCUgaGAUGGa -3'
miRNA:   3'- -UGGUGGCUCGUUGUac-GCGGg-CUAUU- -5'
21039 3' -55.4 NC_004745.1 + 21391 0.68 0.387318
Target:  5'- uGCCAUCcAGCAACGgccaCGCCCGAc-- -3'
miRNA:   3'- -UGGUGGcUCGUUGUac--GCGGGCUauu -5'
21039 3' -55.4 NC_004745.1 + 1771 0.68 0.387318
Target:  5'- -aCACCGuGGCGACA-GUGCCgGAUGc -3'
miRNA:   3'- ugGUGGC-UCGUUGUaCGCGGgCUAUu -5'
21039 3' -55.4 NC_004745.1 + 25270 0.68 0.350472
Target:  5'- aACaGCC-AGCAGCuAUGCGCCgGAUAAu -3'
miRNA:   3'- -UGgUGGcUCGUUG-UACGCGGgCUAUU- -5'
21039 3' -55.4 NC_004745.1 + 9340 0.68 0.350472
Target:  5'- cACCggugaaGCCGAGCAGagggcGCGCCgGAUAAu -3'
miRNA:   3'- -UGG------UGGCUCGUUgua--CGCGGgCUAUU- -5'
21039 3' -55.4 NC_004745.1 + 8843 0.69 0.324516
Target:  5'- cGCCGCCgGAGCcgguCAccCGCCCGAUGGa -3'
miRNA:   3'- -UGGUGG-CUCGuu--GUacGCGGGCUAUU- -5'
21039 3' -55.4 NC_004745.1 + 3978 0.7 0.284495
Target:  5'- gGCCACCGgcGGUGGgGUGaCGCCCuGAUGAc -3'
miRNA:   3'- -UGGUGGC--UCGUUgUAC-GCGGG-CUAUU- -5'
21039 3' -55.4 NC_004745.1 + 6870 1.06 0.000606
Target:  5'- aACCACCGAGCAACAUGCGCCCGAUAAa -3'
miRNA:   3'- -UGGUGGCUCGUUGUACGCGGGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.