miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21042 5' -54.4 NC_004745.1 + 8244 0.66 0.571985
Target:  5'- cUGuGCGCCGGUUGCAc---CAGCGcCc -3'
miRNA:   3'- uGC-CGUGGCCGACGUuuuuGUCGCuG- -5'
21042 5' -54.4 NC_004745.1 + 10705 0.66 0.560456
Target:  5'- -aGGUcauuACCGGCUGCAcAGGcCAGCa-- -3'
miRNA:   3'- ugCCG----UGGCCGACGUuUUU-GUCGcug -5'
21042 5' -54.4 NC_004745.1 + 8647 0.66 0.548991
Target:  5'- cCGGUGCUggcguGGCUGCGGGAAaauCAGCccGACa -3'
miRNA:   3'- uGCCGUGG-----CCGACGUUUUU---GUCG--CUG- -5'
21042 5' -54.4 NC_004745.1 + 7452 0.66 0.537601
Target:  5'- cCGuaACCGGCacccgGCAGGGACGcccagauauuGCGACa -3'
miRNA:   3'- uGCcgUGGCCGa----CGUUUUUGU----------CGCUG- -5'
21042 5' -54.4 NC_004745.1 + 16711 0.66 0.537601
Target:  5'- gACGGCACCGGCgacGacgaGGAAACGaaacucgcGCaGACu -3'
miRNA:   3'- -UGCCGUGGCCGa--Cg---UUUUUGU--------CG-CUG- -5'
21042 5' -54.4 NC_004745.1 + 18394 0.66 0.526293
Target:  5'- gACGGCACCGauGCUGaccGAGCAG-GAg -3'
miRNA:   3'- -UGCCGUGGC--CGACguuUUUGUCgCUg -5'
21042 5' -54.4 NC_004745.1 + 21355 0.67 0.515076
Target:  5'- gAUGGCACCGGCaUGauuu-ACGGCa-- -3'
miRNA:   3'- -UGCCGUGGCCG-ACguuuuUGUCGcug -5'
21042 5' -54.4 NC_004745.1 + 2067 0.67 0.492943
Target:  5'- gGCGGCGCUGGC-GCGuccccgguuGAACAGUucacccGACc -3'
miRNA:   3'- -UGCCGUGGCCGaCGUu--------UUUGUCG------CUG- -5'
21042 5' -54.4 NC_004745.1 + 2975 0.67 0.471257
Target:  5'- gGCGGCGCU-GCUGUAcuGGCAGgGGu -3'
miRNA:   3'- -UGCCGUGGcCGACGUuuUUGUCgCUg -5'
21042 5' -54.4 NC_004745.1 + 5707 0.68 0.460597
Target:  5'- -gGGCGCUGGC-GCAccugcAACGuGCGACa -3'
miRNA:   3'- ugCCGUGGCCGaCGUuu---UUGU-CGCUG- -5'
21042 5' -54.4 NC_004745.1 + 15145 0.68 0.439668
Target:  5'- uGCGGCAuuuCCGGCcauucaggauuUGCAGGAuccacACGGCuGACc -3'
miRNA:   3'- -UGCCGU---GGCCG-----------ACGUUUU-----UGUCG-CUG- -5'
21042 5' -54.4 NC_004745.1 + 19215 0.69 0.3995
Target:  5'- -gGGCgcuGCCGGUgugGgGAuuGCGGCGGCg -3'
miRNA:   3'- ugCCG---UGGCCGa--CgUUuuUGUCGCUG- -5'
21042 5' -54.4 NC_004745.1 + 1123 0.69 0.380315
Target:  5'- cCGGCACCGGCUcGCcAAA--GGUGAa -3'
miRNA:   3'- uGCCGUGGCCGA-CGuUUUugUCGCUg -5'
21042 5' -54.4 NC_004745.1 + 11145 0.7 0.343836
Target:  5'- cACaGCACCGGCUGgG---GC-GCGACa -3'
miRNA:   3'- -UGcCGUGGCCGACgUuuuUGuCGCUG- -5'
21042 5' -54.4 NC_004745.1 + 22253 0.7 0.343836
Target:  5'- gGCGGuCGCCGucGCUGCGGGuuAUGGUGACc -3'
miRNA:   3'- -UGCC-GUGGC--CGACGUUUu-UGUCGCUG- -5'
21042 5' -54.4 NC_004745.1 + 20853 0.7 0.335118
Target:  5'- uAUGGCACCGGUgGUuauauucCGGCGACc -3'
miRNA:   3'- -UGCCGUGGCCGaCGuuuuu--GUCGCUG- -5'
21042 5' -54.4 NC_004745.1 + 19455 0.7 0.309944
Target:  5'- cUGuGCACCGGCcGCAucauccgccGAGGCGGCGGu -3'
miRNA:   3'- uGC-CGUGGCCGaCGU---------UUUUGUCGCUg -5'
21042 5' -54.4 NC_004745.1 + 7923 0.7 0.309944
Target:  5'- gACGGCagGCCGuacauaucaGCcGgAAGAACAGCGACg -3'
miRNA:   3'- -UGCCG--UGGC---------CGaCgUUUUUGUCGCUG- -5'
21042 5' -54.4 NC_004745.1 + 7750 0.72 0.263979
Target:  5'- cCGGUGCCguGGC-GCAGAcgGGCGGCGGCu -3'
miRNA:   3'- uGCCGUGG--CCGaCGUUU--UUGUCGCUG- -5'
21042 5' -54.4 NC_004745.1 + 4578 0.72 0.249936
Target:  5'- gGCGGUcgGCUGGCUGCAGAAAUAccGCa-- -3'
miRNA:   3'- -UGCCG--UGGCCGACGUUUUUGU--CGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.