miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21044 3' -57.9 NC_004745.1 + 167 0.66 0.349884
Target:  5'- --aGCCGCCCGCaGGCgGcGAuguUCAGCc -3'
miRNA:   3'- aagUGGCGGGUG-CCGgU-CUu--AGUCGu -5'
21044 3' -57.9 NC_004745.1 + 2048 0.67 0.324337
Target:  5'- cUCugUGCggACGGCCAGuggCGGCAg -3'
miRNA:   3'- aAGugGCGggUGCCGGUCuuaGUCGU- -5'
21044 3' -57.9 NC_004745.1 + 9979 0.68 0.284153
Target:  5'- gUC-CCGCCCuucugcacuuccaGCGuGCCGGuAAUCAGCc -3'
miRNA:   3'- aAGuGGCGGG-------------UGC-CGGUC-UUAGUCGu -5'
21044 3' -57.9 NC_004745.1 + 9001 0.68 0.277484
Target:  5'- --aAgCGUCUGCGG-CAGAGUCAGCAg -3'
miRNA:   3'- aagUgGCGGGUGCCgGUCUUAGUCGU- -5'
21044 3' -57.9 NC_004745.1 + 16511 0.68 0.277484
Target:  5'- -cCACCGUauCCACuGCCAuuGUCGGCAu -3'
miRNA:   3'- aaGUGGCG--GGUGcCGGUcuUAGUCGU- -5'
21044 3' -57.9 NC_004745.1 + 5398 0.69 0.211616
Target:  5'- -aCGCCGuucaCCCACGGCaacCAGAAcggCAGCAg -3'
miRNA:   3'- aaGUGGC----GGGUGCCG---GUCUUa--GUCGU- -5'
21044 3' -57.9 NC_004745.1 + 6888 0.71 0.173903
Target:  5'- gUCACUGCCUGCGGUgugCGGcAUCGGCu -3'
miRNA:   3'- aAGUGGCGGGUGCCG---GUCuUAGUCGu -5'
21044 3' -57.9 NC_004745.1 + 9682 1.06 0.000346
Target:  5'- gUUCACCGCCCACGGCCAGAAUCAGCAc -3'
miRNA:   3'- -AAGUGGCGGGUGCCGGUCUUAGUCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.