miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21045 5' -61.5 NC_004745.1 + 21111 0.66 0.304387
Target:  5'- -uGCAUCaUGCUGGCaCGGGCGcGCGCa -3'
miRNA:   3'- ccCGUAG-GCGGCUGcGUCUGC-CGCGc -5'
21045 5' -61.5 NC_004745.1 + 1289 0.66 0.289697
Target:  5'- aGGGCGUgcauggUCGCCcaGGCGaGGuCGGCGUGg -3'
miRNA:   3'- -CCCGUA------GGCGG--CUGCgUCuGCCGCGC- -5'
21045 5' -61.5 NC_004745.1 + 2032 0.66 0.289697
Target:  5'- aGGGCGUUaugacugaCGUCGAuuuccaCGCGuucGGCGGCGCu -3'
miRNA:   3'- -CCCGUAG--------GCGGCU------GCGU---CUGCCGCGc -5'
21045 5' -61.5 NC_004745.1 + 8093 0.66 0.279748
Target:  5'- aGGGCAgacaaaaacgaGCUGGCGCAGGUGGCacuGCGu -3'
miRNA:   3'- -CCCGUagg--------CGGCUGCGUCUGCCG---CGC- -5'
21045 5' -61.5 NC_004745.1 + 9337 0.66 0.275568
Target:  5'- cGGUGaa-GCCGA-GCAGAgGGCGCGc -3'
miRNA:   3'- cCCGUaggCGGCUgCGUCUgCCGCGC- -5'
21045 5' -61.5 NC_004745.1 + 9516 0.66 0.261996
Target:  5'- gGGGCGUaucaUGuuG-CGCAGuGCGcGCGCGa -3'
miRNA:   3'- -CCCGUAg---GCggCuGCGUC-UGC-CGCGC- -5'
21045 5' -61.5 NC_004745.1 + 21758 0.67 0.242041
Target:  5'- cGGGCAggucgggCUGCCGguucgugGCGCuguccuGACGGUGUa -3'
miRNA:   3'- -CCCGUa------GGCGGC-------UGCGu-----CUGCCGCGc -5'
21045 5' -61.5 NC_004745.1 + 19328 0.68 0.218181
Target:  5'- uGGCAaaagacUCCGCCGAaaugaccgcacuaCGCAaACaGGCGCGc -3'
miRNA:   3'- cCCGU------AGGCGGCU-------------GCGUcUG-CCGCGC- -5'
21045 5' -61.5 NC_004745.1 + 7751 0.68 0.213098
Target:  5'- cGGUG-CCG-UGGCGCAGACGG-GCGg -3'
miRNA:   3'- cCCGUaGGCgGCUGCGUCUGCCgCGC- -5'
21045 5' -61.5 NC_004745.1 + 19214 0.68 0.213098
Target:  5'- uGGGCG-CUGCCGGuguggggauUGCGG-CGGCGgGa -3'
miRNA:   3'- -CCCGUaGGCGGCU---------GCGUCuGCCGCgC- -5'
21045 5' -61.5 NC_004745.1 + 5641 0.68 0.213098
Target:  5'- aGGGUGUCCGUCa--GCAGGCGGgGa- -3'
miRNA:   3'- -CCCGUAGGCGGcugCGUCUGCCgCgc -5'
21045 5' -61.5 NC_004745.1 + 8971 0.68 0.196882
Target:  5'- aGGGCGUCggCGCUGAgUGCAGAgcUGGCGa- -3'
miRNA:   3'- -CCCGUAG--GCGGCU-GCGUCU--GCCGCgc -5'
21045 5' -61.5 NC_004745.1 + 4033 0.68 0.196882
Target:  5'- aGGGCGUcaccgccaCCGCCgGugGCcuugcuGCGGCGCu -3'
miRNA:   3'- -CCCGUA--------GGCGG-CugCGuc----UGCCGCGc -5'
21045 5' -61.5 NC_004745.1 + 11434 0.68 0.191721
Target:  5'- cGGCAaaucugCUGCCGugGCuggcGugGGCGUu -3'
miRNA:   3'- cCCGUa-----GGCGGCugCGu---CugCCGCGc -5'
21045 5' -61.5 NC_004745.1 + 19447 0.7 0.160557
Target:  5'- cGGCcgcaucAUCCGCCGAgGCGGcgguauugucgccgaGCuGGCGCGc -3'
miRNA:   3'- cCCG------UAGGCGGCUgCGUC---------------UG-CCGCGC- -5'
21045 5' -61.5 NC_004745.1 + 11552 0.7 0.154562
Target:  5'- aGGCA-CUGUCGGCGCAaucCGGCGUGu -3'
miRNA:   3'- cCCGUaGGCGGCUGCGUcu-GCCGCGC- -5'
21045 5' -61.5 NC_004745.1 + 9021 0.7 0.154562
Target:  5'- -uGCAcucagCCGCCGACGCccuGACGGUgacaGCGa -3'
miRNA:   3'- ccCGUa----GGCGGCUGCGu--CUGCCG----CGC- -5'
21045 5' -61.5 NC_004745.1 + 20258 0.7 0.150405
Target:  5'- cGGCAUCauuGCCGGCGguGcACuGGUGCu -3'
miRNA:   3'- cCCGUAGg--CGGCUGCguC-UG-CCGCGc -5'
21045 5' -61.5 NC_004745.1 + 9516 0.7 0.142394
Target:  5'- cGGUcgCUGCCGAgUGCAGAcCGGCgGCa -3'
miRNA:   3'- cCCGuaGGCGGCU-GCGUCU-GCCG-CGc -5'
21045 5' -61.5 NC_004745.1 + 5961 0.71 0.131108
Target:  5'- cGGCGUgCCGCCcuGGCGCGG--GGCGCa -3'
miRNA:   3'- cCCGUA-GGCGG--CUGCGUCugCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.