miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21046 3' -52.7 NC_004745.1 + 9543 0.66 0.682142
Target:  5'- gUUAAGGUCGguuucgacgauaaUGCCGGggcguaucaugUUGCGCAGuGCg -3'
miRNA:   3'- -AGUUCCAGUa------------AUGGCC-----------GACGUGUC-CG- -5'
21046 3' -52.7 NC_004745.1 + 11763 0.66 0.675142
Target:  5'- aUCcAGGaCAUUcCCGGCuaucUGUauACAGGCg -3'
miRNA:   3'- -AGuUCCaGUAAuGGCCG----ACG--UGUCCG- -5'
21046 3' -52.7 NC_004745.1 + 27343 0.66 0.663437
Target:  5'- ---uGGUCAUguUGCUGGCgcUGCACGaGCu -3'
miRNA:   3'- aguuCCAGUA--AUGGCCG--ACGUGUcCG- -5'
21046 3' -52.7 NC_004745.1 + 20688 0.67 0.628174
Target:  5'- aCGGGcGUCAUguuCgGGCagGCACuGGCu -3'
miRNA:   3'- aGUUC-CAGUAau-GgCCGa-CGUGuCCG- -5'
21046 3' -52.7 NC_004745.1 + 21331 0.67 0.628174
Target:  5'- -gAAGGUCgggcguggccGUUGCUGGaugGCACcGGCa -3'
miRNA:   3'- agUUCCAG----------UAAUGGCCga-CGUGuCCG- -5'
21046 3' -52.7 NC_004745.1 + 8336 0.67 0.592944
Target:  5'- gCAGGcGUUGUggacaaucACUGGCgucUGCGCAGGCc -3'
miRNA:   3'- aGUUC-CAGUAa-------UGGCCG---ACGUGUCCG- -5'
21046 3' -52.7 NC_004745.1 + 5880 0.67 0.581262
Target:  5'- cUCcGGGUC-UUACgCGGg-GCGCGGGUg -3'
miRNA:   3'- -AGuUCCAGuAAUG-GCCgaCGUGUCCG- -5'
21046 3' -52.7 NC_004745.1 + 10608 0.7 0.406551
Target:  5'- aUCuGGcGUCAgcgugUGaaugaGGCUGCACGGGCg -3'
miRNA:   3'- -AGuUC-CAGUa----AUgg---CCGACGUGUCCG- -5'
21046 3' -52.7 NC_004745.1 + 18239 0.7 0.406551
Target:  5'- aUCGGGGUUA--ACCGGUcaGC-CAGGCu -3'
miRNA:   3'- -AGUUCCAGUaaUGGCCGa-CGuGUCCG- -5'
21046 3' -52.7 NC_004745.1 + 20256 0.73 0.283548
Target:  5'- aUCGGcaUCAUUGCCGGCggUGCACuGGUg -3'
miRNA:   3'- -AGUUccAGUAAUGGCCG--ACGUGuCCG- -5'
21046 3' -52.7 NC_004745.1 + 10709 1.12 0.000473
Target:  5'- aUCAAGGUCAUUACCGGCUGCACAGGCc -3'
miRNA:   3'- -AGUUCCAGUAAUGGCCGACGUGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.