miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21046 5' -55.9 NC_004745.1 + 168 0.66 0.550162
Target:  5'- gCCGCCCGcagGCGGCgaUGUUCAgcCGUu -3'
miRNA:   3'- -GGCGGGCa--CGUCGgaGUAAGUguGCG- -5'
21046 5' -55.9 NC_004745.1 + 11272 0.66 0.539092
Target:  5'- -aGCCagugGUGCAGUCa-GUUCgACACGCu -3'
miRNA:   3'- ggCGGg---CACGUCGGagUAAG-UGUGCG- -5'
21046 5' -55.9 NC_004745.1 + 3920 0.66 0.506372
Target:  5'- cCCGCCUGaaaaaCAGCCUCGacCACAC-Cg -3'
miRNA:   3'- -GGCGGGCac---GUCGGAGUaaGUGUGcG- -5'
21046 5' -55.9 NC_004745.1 + 5619 0.66 0.495652
Target:  5'- aCCGCCaCG-GCugacauGCCUgAUgaagUGCGCGCa -3'
miRNA:   3'- -GGCGG-GCaCGu-----CGGAgUAa---GUGUGCG- -5'
21046 5' -55.9 NC_004745.1 + 1577 0.66 0.495652
Target:  5'- uCCaGCUCGUGCG--CUCGUUCuauccugccGCGCGCg -3'
miRNA:   3'- -GG-CGGGCACGUcgGAGUAAG---------UGUGCG- -5'
21046 5' -55.9 NC_004745.1 + 3506 0.66 0.495652
Target:  5'- aCCuUCUGcGCGGCCUUGUUCAU-CGCg -3'
miRNA:   3'- -GGcGGGCaCGUCGGAGUAAGUGuGCG- -5'
21046 5' -55.9 NC_004745.1 + 12089 0.68 0.423819
Target:  5'- aCCGCCCGaaguggGCGGCUUCugg-AUGCGUg -3'
miRNA:   3'- -GGCGGGCa-----CGUCGGAGuaagUGUGCG- -5'
21046 5' -55.9 NC_004745.1 + 5742 0.68 0.40446
Target:  5'- gCGCCCcUGCGGCaUCAccagCGuCACGCa -3'
miRNA:   3'- gGCGGGcACGUCGgAGUaa--GU-GUGCG- -5'
21046 5' -55.9 NC_004745.1 + 5998 0.68 0.38567
Target:  5'- aCGCCgGUGCAGUgUCAggugaUUCACccucacugaccgGCGUg -3'
miRNA:   3'- gGCGGgCACGUCGgAGU-----AAGUG------------UGCG- -5'
21046 5' -55.9 NC_004745.1 + 17070 0.7 0.31648
Target:  5'- aCCGCUCGUGC-GCUggGUcUGCGCGCu -3'
miRNA:   3'- -GGCGGGCACGuCGGagUAaGUGUGCG- -5'
21046 5' -55.9 NC_004745.1 + 16755 0.71 0.278209
Target:  5'- gUCGCCgGUGCcGUCUUc--CACGCGCa -3'
miRNA:   3'- -GGCGGgCACGuCGGAGuaaGUGUGCG- -5'
21046 5' -55.9 NC_004745.1 + 26956 0.71 0.271012
Target:  5'- gCGCCCGa-CGGCCUCGcgUgGCGCGUu -3'
miRNA:   3'- gGCGGGCacGUCGGAGUa-AgUGUGCG- -5'
21046 5' -55.9 NC_004745.1 + 28436 0.72 0.224779
Target:  5'- gCGgCaCGUGCAGCCUCA---ACGCGUu -3'
miRNA:   3'- gGCgG-GCACGUCGGAGUaagUGUGCG- -5'
21046 5' -55.9 NC_004745.1 + 213 0.73 0.194916
Target:  5'- gCCGCCUGcggGCGGCUuuuuuauaucccgUCAUcacgcccUCACACGCu -3'
miRNA:   3'- -GGCGGGCa--CGUCGG-------------AGUA-------AGUGUGCG- -5'
21046 5' -55.9 NC_004745.1 + 26457 0.74 0.175341
Target:  5'- gCUGCCCGUcguGCGGCUuaUCcgUCAgcCACGCg -3'
miRNA:   3'- -GGCGGGCA---CGUCGG--AGuaAGU--GUGCG- -5'
21046 5' -55.9 NC_004745.1 + 10675 1.14 0.000196
Target:  5'- aCCGCCCGUGCAGCCUCAUUCACACGCu -3'
miRNA:   3'- -GGCGGGCACGUCGGAGUAAGUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.