miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21049 5' -55.2 NC_004745.1 + 20765 0.66 0.511156
Target:  5'- -gCGGCAGcaUCAGCGcgcagcCAGUGCCUGc -3'
miRNA:   3'- aaGUCGUCc-AGUCGUa-----GUCACGGACc -5'
21049 5' -55.2 NC_004745.1 + 21673 0.66 0.489067
Target:  5'- aUCAGCAuGUaaucCGGCGUCAGcguacUGCCUGc -3'
miRNA:   3'- aAGUCGUcCA----GUCGUAGUC-----ACGGACc -5'
21049 5' -55.2 NC_004745.1 + 10826 0.66 0.485791
Target:  5'- gUCGGUGGGUgccuaucaguaucaUGGCcgCAGUGCCgacGGg -3'
miRNA:   3'- aAGUCGUCCA--------------GUCGuaGUCACGGa--CC- -5'
21049 5' -55.2 NC_004745.1 + 389 0.66 0.467434
Target:  5'- -cCAGCAGGUCAGCg-----GCgCUGGc -3'
miRNA:   3'- aaGUCGUCCAGUCGuagucaCG-GACC- -5'
21049 5' -55.2 NC_004745.1 + 8823 0.67 0.445262
Target:  5'- -cCAGCGuucgcucGGUCAGCAUCAG-GCUg-- -3'
miRNA:   3'- aaGUCGU-------CCAGUCGUAGUCaCGGacc -5'
21049 5' -55.2 NC_004745.1 + 18459 0.76 0.11319
Target:  5'- -gCGGCGaccuccugcucGGUCAGCAUCGGUGCCg-- -3'
miRNA:   3'- aaGUCGU-----------CCAGUCGUAGUCACGGacc -5'
21049 5' -55.2 NC_004745.1 + 17252 1.07 0.000469
Target:  5'- gUUCAGCAGGUCAGCAUCAGUGCCUGGc -3'
miRNA:   3'- -AAGUCGUCCAGUCGUAGUCACGGACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.