miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21051 3' -57.9 NC_004745.1 + 6645 0.66 0.347701
Target:  5'- ---aGCCAguCCCGGauuuGCGGCgaGCAc -3'
miRNA:   3'- aaaaCGGUguGGGUCg---UGCCGgaCGU- -5'
21051 3' -57.9 NC_004745.1 + 22540 0.66 0.347701
Target:  5'- ---cGCCugAgCgGcgcGCAUGGCCUGCGc -3'
miRNA:   3'- aaaaCGGugUgGgU---CGUGCCGGACGU- -5'
21051 3' -57.9 NC_004745.1 + 11199 0.66 0.347701
Target:  5'- --aUGUCGCGcCCCAGC-CGGUgCUGUg -3'
miRNA:   3'- aaaACGGUGU-GGGUCGuGCCG-GACGu -5'
21051 3' -57.9 NC_004745.1 + 11939 0.66 0.330446
Target:  5'- ---gGCgGCugCCAGCuuuGCGGCUccgGCAg -3'
miRNA:   3'- aaaaCGgUGugGGUCG---UGCCGGa--CGU- -5'
21051 3' -57.9 NC_004745.1 + 21398 0.66 0.330446
Target:  5'- --aUGCCGgugcCAUCCAGCaACGGCCacGCc -3'
miRNA:   3'- aaaACGGU----GUGGGUCG-UGCCGGa-CGu -5'
21051 3' -57.9 NC_004745.1 + 13815 0.66 0.319574
Target:  5'- ---cGCCGCAUugccggacaguucaCCAGagaGGCCUGCAc -3'
miRNA:   3'- aaaaCGGUGUG--------------GGUCgugCCGGACGU- -5'
21051 3' -57.9 NC_004745.1 + 306 0.67 0.289342
Target:  5'- cUUUGCCACuuucucaauaucGCCCAGUGacccgacguucucCGGCUUGCc -3'
miRNA:   3'- aAAACGGUG------------UGGGUCGU-------------GCCGGACGu -5'
21051 3' -57.9 NC_004745.1 + 18437 0.68 0.253733
Target:  5'- --cUGCCugACCUuguGGCGCuGGCCgGUAa -3'
miRNA:   3'- aaaACGGugUGGG---UCGUG-CCGGaCGU- -5'
21051 3' -57.9 NC_004745.1 + 18484 0.68 0.240266
Target:  5'- ---cGCCACAaggucaggcaguUCCAGCGCGGCgaccucCUGCu -3'
miRNA:   3'- aaaaCGGUGU------------GGGUCGUGCCG------GACGu -5'
21051 3' -57.9 NC_004745.1 + 8249 0.69 0.197778
Target:  5'- ---cGCCGguUGCaCCAGCGCccGGCCUGCGc -3'
miRNA:   3'- aaaaCGGU--GUG-GGUCGUG--CCGGACGU- -5'
21051 3' -57.9 NC_004745.1 + 17065 0.7 0.186903
Target:  5'- --aUGCCAcCGCUCGugcGCugGGUCUGCGc -3'
miRNA:   3'- aaaACGGU-GUGGGU---CGugCCGGACGU- -5'
21051 3' -57.9 NC_004745.1 + 20658 0.71 0.157385
Target:  5'- ----aCCACugCCA-CGCGGCCUGUAa -3'
miRNA:   3'- aaaacGGUGugGGUcGUGCCGGACGU- -5'
21051 3' -57.9 NC_004745.1 + 16523 0.81 0.028875
Target:  5'- --cUGCCAUugUCGGCAUGGUCUGCAc -3'
miRNA:   3'- aaaACGGUGugGGUCGUGCCGGACGU- -5'
21051 3' -57.9 NC_004745.1 + 19366 1.06 0.000285
Target:  5'- cUUUUGCCACACCCAGCACGGCCUGCAa -3'
miRNA:   3'- -AAAACGGUGUGGGUCGUGCCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.