miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21051	5'	-50.9	NC_004745.1	+	5685	0.66	0.792916
	Target:  5'- uUGCGCGcACuUCAUcaggcaugucAGCCGuGGCgGUCAGu -3' miRNA:   3'- -ACGCGUuUG-AGUA----------UUGGC-CCG-UAGUC- -5'
21051	5'	-50.9	NC_004745.1	+	18323	0.66	0.749082
	Target:  5'- cUGCGCGGugUCAgucUGGCUGcGGUcgCAa -3' miRNA:   3'- -ACGCGUUugAGU---AUUGGC-CCGuaGUc -5'
21051	5'	-50.9	NC_004745.1	+	6901	0.66	0.737736
	Target:  5'- gUGUGCGgcaucGGCUCcauGCUGGGUAUCGc -3' miRNA:   3'- -ACGCGU-----UUGAGuauUGGCCCGUAGUc -5'
21051	5'	-50.9	NC_004745.1	+	3603	0.67	0.703004
	Target:  5'- cGUGCcgAGGCUU---GCCGGGuCAUCGGu -3' miRNA:   3'- aCGCG--UUUGAGuauUGGCCC-GUAGUC- -5'
21051	5'	-50.9	NC_004745.1	+	8425	0.68	0.667538
	Target:  5'- aGCGCGuuCUCAagcAGCCGGaUAUCGGc -3' miRNA:   3'- aCGCGUuuGAGUa--UUGGCCcGUAGUC- -5'
21051	5'	-50.9	NC_004745.1	+	8309	0.69	0.582827
	Target:  5'- cUGCGCAGgccgggcGCUgGUGcaACCGGcgcacaGCAUCAGg -3' miRNA:   3'- -ACGCGUU-------UGAgUAU--UGGCC------CGUAGUC- -5'
21051	5'	-50.9	NC_004745.1	+	19326	1.09	0.001274
	Target:  5'- cUGCGCAAACUCAUAACCGGGCAUCAGc -3' miRNA:   3'- -ACGCGUUUGAGUAUUGGCCCGUAGUC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home