miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21052 5' -55.3 NC_004745.1 + 1689 0.71 0.267623
Target:  5'- cGGCcaccACCGgcGGUGCCAGUaccacgcaucCGGCACUg -3'
miRNA:   3'- -CCG----UGGCuaCUACGGUCA----------GUCGUGGu -5'
21052 5' -55.3 NC_004745.1 + 8531 0.73 0.181787
Target:  5'- aGCACCG-UGAcgGCauCAGUCAGCGCCc -3'
miRNA:   3'- cCGUGGCuACUa-CG--GUCAGUCGUGGu -5'
21052 5' -55.3 NC_004745.1 + 11380 0.75 0.148732
Target:  5'- aGCGgUGAUGA-GCCGGUCGGCAgCAg -3'
miRNA:   3'- cCGUgGCUACUaCGGUCAGUCGUgGU- -5'
21052 5' -55.3 NC_004745.1 + 20337 1.11 0.00031
Target:  5'- uGGCACCGAUGAUGCCAGUCAGCACCAg -3'
miRNA:   3'- -CCGUGGCUACUACGGUCAGUCGUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.