miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21053 3' -61.1 NC_004745.1 + 8316 0.7 0.145109
Target:  5'- cUGGC-GUCugCGCaGGCCgggcgcugguGCAACCGGCg -3'
miRNA:   3'- -AUCGcCGGugGUG-CCGG----------UGUUGGCCG- -5'
21053 3' -61.1 NC_004745.1 + 19252 0.7 0.145109
Target:  5'- cAGCGcCCACUGaGGCCAUAuuuCCGGCc -3'
miRNA:   3'- aUCGCcGGUGGUgCCGGUGUu--GGCCG- -5'
21053 3' -61.1 NC_004745.1 + 22910 0.7 0.137201
Target:  5'- aUAGCGGCUugUAC-GCgCAUGugCGGCa -3'
miRNA:   3'- -AUCGCCGGugGUGcCG-GUGUugGCCG- -5'
21053 3' -61.1 NC_004745.1 + 11941 0.7 0.12969
Target:  5'- gUGGCGGCUGCCagcuuuGCGGCU----CCGGCa -3'
miRNA:   3'- -AUCGCCGGUGG------UGCCGGuguuGGCCG- -5'
21053 3' -61.1 NC_004745.1 + 23038 0.7 0.12969
Target:  5'- -uGCGGCC-CCACGGCguggACuucucCCGGCu -3'
miRNA:   3'- auCGCCGGuGGUGCCGg---UGuu---GGCCG- -5'
21053 3' -61.1 NC_004745.1 + 20037 0.7 0.12969
Target:  5'- aGGCGGCagucauCAgCACGGCgGCGGCUGaGCu -3'
miRNA:   3'- aUCGCCG------GUgGUGCCGgUGUUGGC-CG- -5'
21053 3' -61.1 NC_004745.1 + 7809 0.7 0.126078
Target:  5'- gAGCcGCCGCC-CGucugcGCCACGgcACCGGCu -3'
miRNA:   3'- aUCGcCGGUGGuGC-----CGGUGU--UGGCCG- -5'
21053 3' -61.1 NC_004745.1 + 11130 0.71 0.119133
Target:  5'- aAGCGuaUAUCACGGCacaGC-ACCGGCu -3'
miRNA:   3'- aUCGCcgGUGGUGCCGg--UGuUGGCCG- -5'
21053 3' -61.1 NC_004745.1 + 20967 0.71 0.115796
Target:  5'- gAGCGGCCAgCCGguGCCGUGACUGGCu -3'
miRNA:   3'- aUCGCCGGU-GGUgcCGGUGUUGGCCG- -5'
21053 3' -61.1 NC_004745.1 + 9571 0.71 0.109382
Target:  5'- -cGcCGGUCugCAcuCGGCaGCGACCGGCg -3'
miRNA:   3'- auC-GCCGGugGU--GCCGgUGUUGGCCG- -5'
21053 3' -61.1 NC_004745.1 + 9639 0.72 0.100382
Target:  5'- aGGUGcCCACCAUGuGCgcgaACGACCGGCa -3'
miRNA:   3'- aUCGCcGGUGGUGC-CGg---UGUUGGCCG- -5'
21053 3' -61.1 NC_004745.1 + 1688 0.72 0.100094
Target:  5'- --cCGGCCACCAcCGGCggugccaguaccaCGCAuCCGGCa -3'
miRNA:   3'- aucGCCGGUGGU-GCCG-------------GUGUuGGCCG- -5'
21053 3' -61.1 NC_004745.1 + 11073 0.77 0.040551
Target:  5'- aUGGCGGCagaCugCACGGUCACGcggucggccACCGGCc -3'
miRNA:   3'- -AUCGCCG---GugGUGCCGGUGU---------UGGCCG- -5'
21053 3' -61.1 NC_004745.1 + 20488 1.08 0.00012
Target:  5'- aUAGCGGCCACCACGGCCACAACCGGCc -3'
miRNA:   3'- -AUCGCCGGUGGUGCCGGUGUUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.