miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21053 5' -54 NC_004745.1 + 8475 0.66 0.638267
Target:  5'- gGCGCUGAcUGauGCCGUC---ACGGUGCUg -3'
miRNA:   3'- -CGUGGCU-AC--CGGCAGuauUGCCGUGA- -5'
21053 5' -54 NC_004745.1 + 22000 0.66 0.626694
Target:  5'- cGCACCGAgcgUGG-UGUCAUGccaggagccuucACGGCGg- -3'
miRNA:   3'- -CGUGGCU---ACCgGCAGUAU------------UGCCGUga -5'
21053 5' -54 NC_004745.1 + 30314 0.66 0.625537
Target:  5'- aCACCGuuGUGGaaggcaaCCGUCGcuUAACGGCAg- -3'
miRNA:   3'- cGUGGC--UACC-------GGCAGU--AUUGCCGUga -5'
21053 5' -54 NC_004745.1 + 28259 0.66 0.592052
Target:  5'- uUACCGcAUGGgCGUCAacGUGGCGCa -3'
miRNA:   3'- cGUGGC-UACCgGCAGUauUGCCGUGa -5'
21053 5' -54 NC_004745.1 + 16754 0.67 0.580565
Target:  5'- uCGCCGGU-GCCGUCuuccACGcGCACa -3'
miRNA:   3'- cGUGGCUAcCGGCAGuau-UGC-CGUGa -5'
21053 5' -54 NC_004745.1 + 754 0.67 0.557744
Target:  5'- gGCG-CGAaGGCUGUCGgcucguugaagGACGGCACc -3'
miRNA:   3'- -CGUgGCUaCCGGCAGUa----------UUGCCGUGa -5'
21053 5' -54 NC_004745.1 + 4652 0.67 0.557744
Target:  5'- cGCGCCGG-GGCU-UCAUuGCGGUAUUu -3'
miRNA:   3'- -CGUGGCUaCCGGcAGUAuUGCCGUGA- -5'
21053 5' -54 NC_004745.1 + 17943 0.67 0.535185
Target:  5'- gGCGaaaCGGUGGCCGUCG-AAgGGuCAUg -3'
miRNA:   3'- -CGUg--GCUACCGGCAGUaUUgCC-GUGa -5'
21053 5' -54 NC_004745.1 + 20895 0.68 0.501982
Target:  5'- cCACCGGU-GCCauaCGUGGCGGCAUg -3'
miRNA:   3'- cGUGGCUAcCGGca-GUAUUGCCGUGa -5'
21053 5' -54 NC_004745.1 + 5022 0.69 0.459192
Target:  5'- cGCGgCGAUGGCUGUCAUccauguaguaGAUGG-ACa -3'
miRNA:   3'- -CGUgGCUACCGGCAGUA----------UUGCCgUGa -5'
21053 5' -54 NC_004745.1 + 1335 0.69 0.459192
Target:  5'- cGCugCGGcUGGCC-UCAUAgguGGCGCUg -3'
miRNA:   3'- -CGugGCU-ACCGGcAGUAUug-CCGUGA- -5'
21053 5' -54 NC_004745.1 + 11004 0.71 0.34388
Target:  5'- -gGCCGGUGGCCGaccgCGUGACcGUGCa -3'
miRNA:   3'- cgUGGCUACCGGCa---GUAUUGcCGUGa -5'
21053 5' -54 NC_004745.1 + 18367 0.73 0.250918
Target:  5'- uGCACUGAUuaaggugcuGCCGcgCAUGACGGCACc -3'
miRNA:   3'- -CGUGGCUAc--------CGGCa-GUAUUGCCGUGa -5'
21053 5' -54 NC_004745.1 + 4018 0.75 0.174636
Target:  5'- cCGCCGGUGGCCuugCu--GCGGCGCUg -3'
miRNA:   3'- cGUGGCUACCGGca-GuauUGCCGUGA- -5'
21053 5' -54 NC_004745.1 + 18438 0.76 0.151254
Target:  5'- aGCAUCGGU-GCCGUCAUGcGCGGCAg- -3'
miRNA:   3'- -CGUGGCUAcCGGCAGUAU-UGCCGUga -5'
21053 5' -54 NC_004745.1 + 20453 1.11 0.000472
Target:  5'- cGCACCGAUGGCCGUCAUAACGGCACUa -3'
miRNA:   3'- -CGUGGCUACCGGCAGUAUUGCCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.