miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21057 5' -43.2 NC_004745.1 + 19483 0.69 0.980159
Target:  5'- aCGCUGA-AUAUGGCGCuggcGAAcCGCCg -3'
miRNA:   3'- cGCGACUaUAUGUUGCGu---UUUaGUGG- -5'
21057 5' -43.2 NC_004745.1 + 5635 0.69 0.980159
Target:  5'- uGC-CUGAUgaaGUGC-GCGCAaagcugcacaAAAUCACCg -3'
miRNA:   3'- -CGcGACUA---UAUGuUGCGU----------UUUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 19650 0.69 0.979894
Target:  5'- uGCGCUGAccUAUGCcgcaccuGugGCAAAAaauGCCg -3'
miRNA:   3'- -CGCGACU--AUAUG-------UugCGUUUUag-UGG- -5'
21057 5' -43.2 NC_004745.1 + 21503 0.7 0.970993
Target:  5'- aCGCgGGUGagcgACAGCGUAAAAUCAa- -3'
miRNA:   3'- cGCGaCUAUa---UGUUGCGUUUUAGUgg -5'
21057 5' -43.2 NC_004745.1 + 26420 0.7 0.967352
Target:  5'- uGCGCUGGUuUGCGAagaGUguGAUaCGCCa -3'
miRNA:   3'- -CGCGACUAuAUGUUg--CGuuUUA-GUGG- -5'
21057 5' -43.2 NC_004745.1 + 16590 0.7 0.966971
Target:  5'- gGUGCUGAUuaccaauGUGCAgaGCGCAAuugcAAagGCCg -3'
miRNA:   3'- -CGCGACUA-------UAUGU--UGCGUU----UUagUGG- -5'
21057 5' -43.2 NC_004745.1 + 16970 0.7 0.963399
Target:  5'- uGCGCUGAUAUACccgAAgGCAu--UCAguuCCu -3'
miRNA:   3'- -CGCGACUAUAUG---UUgCGUuuuAGU---GG- -5'
21057 5' -43.2 NC_004745.1 + 5313 0.7 0.96257
Target:  5'- uGCGCUGGUcUGCGGCGagcuua-ACCa -3'
miRNA:   3'- -CGCGACUAuAUGUUGCguuuuagUGG- -5'
21057 5' -43.2 NC_004745.1 + 1255 0.7 0.959124
Target:  5'- gGUGCUGAUAc-CGGCGguGAGUgGCUc -3'
miRNA:   3'- -CGCGACUAUauGUUGCguUUUAgUGG- -5'
21057 5' -43.2 NC_004745.1 + 8009 0.71 0.949573
Target:  5'- uCGCUGG---ACAGgGCGAAuaacGUCGCCa -3'
miRNA:   3'- cGCGACUauaUGUUgCGUUU----UAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 8297 0.71 0.938641
Target:  5'- gGCGCUGGUGcaacCGGCGCAcagcaucaggcAGGUCAgCa -3'
miRNA:   3'- -CGCGACUAUau--GUUGCGU-----------UUUAGUgG- -5'
21057 5' -43.2 NC_004745.1 + 7836 0.71 0.932646
Target:  5'- cGCGCUGAUuUAUcuCGUGGcGUCGCUg -3'
miRNA:   3'- -CGCGACUAuAUGuuGCGUUuUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 28602 0.72 0.926296
Target:  5'- cGCGCcGAgAUGCGGCGCGuAAAU-GCCg -3'
miRNA:   3'- -CGCGaCUaUAUGUUGCGU-UUUAgUGG- -5'
21057 5' -43.2 NC_004745.1 + 6996 0.72 0.919589
Target:  5'- gGCGCUGA-----AugGCAAucucAAUCACCu -3'
miRNA:   3'- -CGCGACUauaugUugCGUU----UUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 8979 0.72 0.919589
Target:  5'- gGCGCUGA-GUGCAGagcugGCGAAgcGUCugCg -3'
miRNA:   3'- -CGCGACUaUAUGUUg----CGUUU--UAGugG- -5'
21057 5' -43.2 NC_004745.1 + 17078 0.73 0.872014
Target:  5'- uGCGCUGGgucUGCG-CGCuAAAAUCgACCa -3'
miRNA:   3'- -CGCGACUau-AUGUuGCG-UUUUAG-UGG- -5'
21057 5' -43.2 NC_004745.1 + 3393 0.74 0.833814
Target:  5'- gGCGCUGAaagGCAaauggGCGCuguuugcgAAAAUCACCc -3'
miRNA:   3'- -CGCGACUauaUGU-----UGCG--------UUUUAGUGG- -5'
21057 5' -43.2 NC_004745.1 + 2822 0.75 0.813023
Target:  5'- -gGCUGAUGgggGCAACGCu--GUC-CCa -3'
miRNA:   3'- cgCGACUAUa--UGUUGCGuuuUAGuGG- -5'
21057 5' -43.2 NC_004745.1 + 12282 0.75 0.802253
Target:  5'- aCGgUGAUG-GCGACGCAGGAUUACg -3'
miRNA:   3'- cGCgACUAUaUGUUGCGUUUUAGUGg -5'
21057 5' -43.2 NC_004745.1 + 28473 1.19 0.002463
Target:  5'- cGCGCUGAUAUACAACGCAAAAUCACCa -3'
miRNA:   3'- -CGCGACUAUAUGUUGCGUUUUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.