miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21058 5' -56.8 NC_004745.1 + 22010 0.66 0.477545
Target:  5'- aGUGuCg--CU-CCGUCACUGGCCGg -3'
miRNA:   3'- cCACuGuuaGAcGGCGGUGACCGGCa -5'
21058 5' -56.8 NC_004745.1 + 22529 0.66 0.423555
Target:  5'- cGG-GGCGuugcggaguucuccAUCaGCCuuGCCACUGGUCGUg -3'
miRNA:   3'- -CCaCUGU--------------UAGaCGG--CGGUGACCGGCA- -5'
21058 5' -56.8 NC_004745.1 + 11026 0.67 0.4167
Target:  5'- cGUG-CAGUCUGCCGCCAUc-GuuGa -3'
miRNA:   3'- cCACuGUUAGACGGCGGUGacCggCa -5'
21058 5' -56.8 NC_004745.1 + 1702 0.67 0.410878
Target:  5'- cGGUGcCAGUaccacgcauccggcaCUGUCGCCACggugugacgGGUCGUa -3'
miRNA:   3'- -CCACuGUUA---------------GACGGCGGUGa--------CCGGCA- -5'
21058 5' -56.8 NC_004745.1 + 24123 0.67 0.407025
Target:  5'- --cGGCGGUCUGCU--CGCUGGCCu- -3'
miRNA:   3'- ccaCUGUUAGACGGcgGUGACCGGca -5'
21058 5' -56.8 NC_004745.1 + 1353 0.67 0.369771
Target:  5'- aGGUGGCg--CUGCgucCGCUGCUGGUCa- -3'
miRNA:   3'- -CCACUGuuaGACG---GCGGUGACCGGca -5'
21058 5' -56.8 NC_004745.1 + 22229 0.69 0.294817
Target:  5'- uGGUGAC---CUGCgGguuuuuuuuaCCGCUGGCCGUc -3'
miRNA:   3'- -CCACUGuuaGACGgC----------GGUGACCGGCA- -5'
21058 5' -56.8 NC_004745.1 + 11434 0.69 0.28726
Target:  5'- --cGGCaAAUCUGCUGCCG-UGGCUGg -3'
miRNA:   3'- ccaCUG-UUAGACGGCGGUgACCGGCa -5'
21058 5' -56.8 NC_004745.1 + 9869 0.69 0.2828
Target:  5'- cGUGGCAGUaacagaaucagaaGCCGUCacGCUGGCCGUu -3'
miRNA:   3'- cCACUGUUAga-----------CGGCGG--UGACCGGCA- -5'
21058 5' -56.8 NC_004745.1 + 8090 0.7 0.251756
Target:  5'- uGGUGAUGgucGUCUGCUGuUCACUGGCgaCGUu -3'
miRNA:   3'- -CCACUGU---UAGACGGC-GGUGACCG--GCA- -5'
21058 5' -56.8 NC_004745.1 + 20417 0.7 0.245105
Target:  5'- cGGUG-CGAUUagcugGCCGgUugUGGCCGUg -3'
miRNA:   3'- -CCACuGUUAGa----CGGCgGugACCGGCA- -5'
21058 5' -56.8 NC_004745.1 + 23881 0.73 0.152972
Target:  5'- ---cACGGaCUGCCGCCACUGGCgGa -3'
miRNA:   3'- ccacUGUUaGACGGCGGUGACCGgCa -5'
21058 5' -56.8 NC_004745.1 + 7690 0.78 0.073649
Target:  5'- --gGGCGGgagCUGCCGCCggaaucGCUGGCCGUg -3'
miRNA:   3'- ccaCUGUUa--GACGGCGG------UGACCGGCA- -5'
21058 5' -56.8 NC_004745.1 + 1983 0.96 0.003042
Target:  5'- uGGUGACAAUCUG-CGCCACUGGCCGUc -3'
miRNA:   3'- -CCACUGUUAGACgGCGGUGACCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.