miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21059 5' -59.6 NC_004745.1 + 4585 0.66 0.310427
Target:  5'- gGCUGGCUGcagaaaUACCGcaAUGAagcCCCGGCGc -3'
miRNA:   3'- -CGACCGGCa-----GUGGC--UACU---GGGCCGUu -5'
21059 5' -59.6 NC_004745.1 + 2000 0.68 0.246
Target:  5'- aCUGGCCGUcCGCacaGAgaaGACCucCGGCAAg -3'
miRNA:   3'- cGACCGGCA-GUGg--CUa--CUGG--GCCGUU- -5'
21059 5' -59.6 NC_004745.1 + 21257 0.68 0.246
Target:  5'- cGCUGGCCGgugugcuuuaUC-CCGAacUGACC-GGCGGa -3'
miRNA:   3'- -CGACCGGC----------AGuGGCU--ACUGGgCCGUU- -5'
21059 5' -59.6 NC_004745.1 + 7458 0.68 0.227129
Target:  5'- cGCUGaCCGUaACCGGc-ACCCGGCAGg -3'
miRNA:   3'- -CGACcGGCAgUGGCUacUGGGCCGUU- -5'
21059 5' -59.6 NC_004745.1 + 8306 0.69 0.209499
Target:  5'- cGCaGGCCGggCGCUGGUGcaaCCGGCGc -3'
miRNA:   3'- -CGaCCGGCa-GUGGCUACug-GGCCGUu -5'
21059 5' -59.6 NC_004745.1 + 22205 0.71 0.138165
Target:  5'- cGCUGGCCGUCACCcccuGCCCcGCu- -3'
miRNA:   3'- -CGACCGGCAGUGGcuacUGGGcCGuu -5'
21059 5' -59.6 NC_004745.1 + 21339 0.77 0.05283
Target:  5'- gGCgUGGCCGUUGCUgGAUGGCaCCGGCAu -3'
miRNA:   3'- -CG-ACCGGCAGUGG-CUACUG-GGCCGUu -5'
21059 5' -59.6 NC_004745.1 + 3536 1.07 0.000203
Target:  5'- gGCUGGCCGUCACCGAUGACCCGGCAAg -3'
miRNA:   3'- -CGACCGGCAGUGGCUACUGGGCCGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.