Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21059 | 5' | -59.6 | NC_004745.1 | + | 4585 | 0.66 | 0.310427 |
Target: 5'- gGCUGGCUGcagaaaUACCGcaAUGAagcCCCGGCGc -3' miRNA: 3'- -CGACCGGCa-----GUGGC--UACU---GGGCCGUu -5' |
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21059 | 5' | -59.6 | NC_004745.1 | + | 2000 | 0.68 | 0.246 |
Target: 5'- aCUGGCCGUcCGCacaGAgaaGACCucCGGCAAg -3' miRNA: 3'- cGACCGGCA-GUGg--CUa--CUGG--GCCGUU- -5' |
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21059 | 5' | -59.6 | NC_004745.1 | + | 21257 | 0.68 | 0.246 |
Target: 5'- cGCUGGCCGgugugcuuuaUC-CCGAacUGACC-GGCGGa -3' miRNA: 3'- -CGACCGGC----------AGuGGCU--ACUGGgCCGUU- -5' |
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21059 | 5' | -59.6 | NC_004745.1 | + | 7458 | 0.68 | 0.227129 |
Target: 5'- cGCUGaCCGUaACCGGc-ACCCGGCAGg -3' miRNA: 3'- -CGACcGGCAgUGGCUacUGGGCCGUU- -5' |
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21059 | 5' | -59.6 | NC_004745.1 | + | 8306 | 0.69 | 0.209499 |
Target: 5'- cGCaGGCCGggCGCUGGUGcaaCCGGCGc -3' miRNA: 3'- -CGaCCGGCa-GUGGCUACug-GGCCGUu -5' |
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21059 | 5' | -59.6 | NC_004745.1 | + | 22205 | 0.71 | 0.138165 |
Target: 5'- cGCUGGCCGUCACCcccuGCCCcGCu- -3' miRNA: 3'- -CGACCGGCAGUGGcuacUGGGcCGuu -5' |
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21059 | 5' | -59.6 | NC_004745.1 | + | 21339 | 0.77 | 0.05283 |
Target: 5'- gGCgUGGCCGUUGCUgGAUGGCaCCGGCAu -3' miRNA: 3'- -CG-ACCGGCAGUGG-CUACUG-GGCCGUu -5' |
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21059 | 5' | -59.6 | NC_004745.1 | + | 3536 | 1.07 | 0.000203 |
Target: 5'- gGCUGGCCGUCACCGAUGACCCGGCAAg -3' miRNA: 3'- -CGACCGGCAGUGGCUACUGGGCCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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