miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21061	3'	-58.7	NC_004745.1	+	5186	0.66	0.364565
	Target:  5'- cAUCGGUuacgcUC-CCGGCUCUucgGUCGCCu- -3' miRNA:   3'- -UAGCCAc----AGuGGCCGAGG---UAGCGGuc -5'
21061	3'	-58.7	NC_004745.1	+	4368	0.66	0.347166
	Target:  5'- cUCGGUGcCACCGGCggugUCGguggUGCUGGc -3' miRNA:   3'- uAGCCACaGUGGCCGa---GGUa---GCGGUC- -5'
21061	3'	-58.7	NC_004745.1	+	1314	0.67	0.291033
	Target:  5'- gGUCGGcGUgGCUGGCUUCcUCGCUg- -3' miRNA:   3'- -UAGCCaCAgUGGCCGAGGuAGCGGuc -5'
21061	3'	-58.7	NC_004745.1	+	17149	0.67	0.291033
	Target:  5'- -aCGGUGUUACCGGCaucagugcaUCCGUCuuCUGGg -3' miRNA:   3'- uaGCCACAGUGGCCG---------AGGUAGc-GGUC- -5'
21061	3'	-58.7	NC_004745.1	+	8900	0.74	0.104535
	Target:  5'- cAUCGGgcggGUgACCGGCUCCggCGgCGGg -3' miRNA:   3'- -UAGCCa---CAgUGGCCGAGGuaGCgGUC- -5'
21061	3'	-58.7	NC_004745.1	+	6898	0.76	0.073534
	Target:  5'- -gCGGUGUgcggCAUCGGCUCCAugcuggguaUCGCCGGu -3' miRNA:   3'- uaGCCACA----GUGGCCGAGGU---------AGCGGUC- -5'
21061	3'	-58.7	NC_004745.1	+	4284	1.05	0.000354
	Target:  5'- cAUCGGUGUCACCGGCUCCAUCGCCAGc -3' miRNA:   3'- -UAGCCACAGUGGCCGAGGUAGCGGUC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home