miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21061 5' -60.9 NC_004745.1 + 20843 0.66 0.310799
Target:  5'- uGCCGCCacguaUGGCACCGgugguuauauuccGGCGacCAGCu -3'
miRNA:   3'- gUGGCGGcc---ACCGUGGC-------------UCGCa-GUCG- -5'
21061 5' -60.9 NC_004745.1 + 7745 0.66 0.289106
Target:  5'- uGCaGCCGGUgccguGGCGCagaCGGGCGgCGGCu -3'
miRNA:   3'- gUGgCGGCCA-----CCGUG---GCUCGCaGUCG- -5'
21061 5' -60.9 NC_004745.1 + 21769 0.66 0.28838
Target:  5'- gGCUGCCGGUucguGGCGCUGuccugacGGUGuauaUCGGCu -3'
miRNA:   3'- gUGGCGGCCA----CCGUGGC-------UCGC----AGUCG- -5'
21061 5' -60.9 NC_004745.1 + 8248 0.66 0.281906
Target:  5'- --gCGCCGGUuGCACC-AGCGccCGGCc -3'
miRNA:   3'- gugGCGGCCAcCGUGGcUCGCa-GUCG- -5'
21061 5' -60.9 NC_004745.1 + 9512 0.66 0.274849
Target:  5'- --aCGCCGGUcGCuGCCGAGUGcagacCGGCg -3'
miRNA:   3'- gugGCGGCCAcCG-UGGCUCGCa----GUCG- -5'
21061 5' -60.9 NC_004745.1 + 23 0.67 0.253872
Target:  5'- gCGCUGgCGGUGGUGCgGAuuuuauuuuuucaGCGUCugAGCg -3'
miRNA:   3'- -GUGGCgGCCACCGUGgCU-------------CGCAG--UCG- -5'
21061 5' -60.9 NC_004745.1 + 4371 0.67 0.248033
Target:  5'- --aCGCuCGGUGcCACCGgcGGUGUCGGUg -3'
miRNA:   3'- gugGCG-GCCACcGUGGC--UCGCAGUCG- -5'
21061 5' -60.9 NC_004745.1 + 1412 0.67 0.241676
Target:  5'- --aUGUCGGUGGCGCUGA-CGUCAu- -3'
miRNA:   3'- gugGCGGCCACCGUGGCUcGCAGUcg -5'
21061 5' -60.9 NC_004745.1 + 8112 0.67 0.235456
Target:  5'- uGgCGCaGGUGGCACU--GCGUCAGg -3'
miRNA:   3'- gUgGCGgCCACCGUGGcuCGCAGUCg -5'
21061 5' -60.9 NC_004745.1 + 8963 0.68 0.223418
Target:  5'- uCACCGUCaGGgcgucGGCGCUGAGUG-CAGa -3'
miRNA:   3'- -GUGGCGG-CCa----CCGUGGCUCGCaGUCg -5'
21061 5' -60.9 NC_004745.1 + 2755 0.68 0.22283
Target:  5'- uCACCGCCGGUuuucugcGGUuugaugaUGAGCuggGUCAGCc -3'
miRNA:   3'- -GUGGCGGCCA-------CCGug-----GCUCG---CAGUCG- -5'
21061 5' -60.9 NC_004745.1 + 89 0.68 0.217598
Target:  5'- --gCGCCGG-GGCAUUGGuGUGUCuGCg -3'
miRNA:   3'- gugGCGGCCaCCGUGGCU-CGCAGuCG- -5'
21061 5' -60.9 NC_004745.1 + 5956 0.68 0.217598
Target:  5'- uGCCGCCc-UGGCGCgGGGCGcauUCGGUu -3'
miRNA:   3'- gUGGCGGccACCGUGgCUCGC---AGUCG- -5'
21061 5' -60.9 NC_004745.1 + 9574 0.69 0.185348
Target:  5'- uGCCGCCGGUcuGCACuCGgcAGCGacCGGCg -3'
miRNA:   3'- gUGGCGGCCAc-CGUG-GC--UCGCa-GUCG- -5'
21061 5' -60.9 NC_004745.1 + 19662 0.7 0.152697
Target:  5'- uGCCGCaccuGUGGCaaaaaauGCCG-GUGUCAGCa -3'
miRNA:   3'- gUGGCGgc--CACCG-------UGGCuCGCAGUCG- -5'
21061 5' -60.9 NC_004745.1 + 4935 0.71 0.122571
Target:  5'- gUACCGCCGGcaGGuUACCGAuGCGUUucuGGCu -3'
miRNA:   3'- -GUGGCGGCCa-CC-GUGGCU-CGCAG---UCG- -5'
21061 5' -60.9 NC_004745.1 + 1737 0.72 0.105555
Target:  5'- gCACCGCCGGUGGUggccggugGCaaauucagaauacuUGAGCGUCAc- -3'
miRNA:   3'- -GUGGCGGCCACCG--------UG--------------GCUCGCAGUcg -5'
21061 5' -60.9 NC_004745.1 + 4021 0.76 0.053345
Target:  5'- cCACCGCCGGUGGCcuuGCUGcGGCG-CuGCu -3'
miRNA:   3'- -GUGGCGGCCACCG---UGGC-UCGCaGuCG- -5'
21061 5' -60.9 NC_004745.1 + 4319 1.1 0.000114
Target:  5'- aCACCGCCGGUGGCACCGAGCGUCAGCc -3'
miRNA:   3'- -GUGGCGGCCACCGUGGCUCGCAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.