miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21062	3'	-54.7	NC_004745.1	+	4615	0.66	0.55493
	Target:  5'- -cGACCGCcacauccuGCAGC-AUCgGAUuGCUGc -3' miRNA:   3'- gaCUGGCGu-------CGUCGuUAGgCUA-CGAC- -5'
21062	3'	-54.7	NC_004745.1	+	19232	0.66	0.532198
	Target:  5'- -gGAUUGCGGCGGCGGgaacgauggCCGGaguuaaguUGCUGa -3' miRNA:   3'- gaCUGGCGUCGUCGUUa--------GGCU--------ACGAC- -5'
21062	3'	-54.7	NC_004745.1	+	19447	0.66	0.53107
	Target:  5'- -cGGCCGCaucauccgccgaGGCGGCGGUauugucgCCGA-GCUGg -3' miRNA:   3'- gaCUGGCG------------UCGUCGUUA-------GGCUaCGAC- -5'
21062	3'	-54.7	NC_004745.1	+	23824	0.67	0.465233
	Target:  5'- uUGGCCuccgccaGUGGCGGCAGUCCGugaauuggGUGUUGc -3' miRNA:   3'- gACUGG-------CGUCGUCGUUAGGC--------UACGAC- -5'
21062	3'	-54.7	NC_004745.1	+	18382	0.67	0.455719
	Target:  5'- gCUG-CCGCGcauGaCGGCA--CCGAUGCUGa -3' miRNA:   3'- -GACuGGCGU---C-GUCGUuaGGCUACGAC- -5'
21062	3'	-54.7	NC_004745.1	+	8828	0.67	0.455719
	Target:  5'- aCUGACCaGCguucgcucGGuCAGCAucaggCUGAUGCUGa -3' miRNA:   3'- -GACUGG-CG--------UC-GUCGUua---GGCUACGAC- -5'
21062	3'	-54.7	NC_004745.1	+	18337	0.68	0.445271
	Target:  5'- uCUGGCUGCGGUcGCAAacUCCGAagucgaUGCa- -3' miRNA:   3'- -GACUGGCGUCGuCGUU--AGGCU------ACGac -5'
21062	3'	-54.7	NC_004745.1	+	22051	0.68	0.434959
	Target:  5'- -cGACCaGUcGCAGgAGUCUGAUGCg- -3' miRNA:   3'- gaCUGG-CGuCGUCgUUAGGCUACGac -5'
21062	3'	-54.7	NC_004745.1	+	5199	0.7	0.340019
	Target:  5'- aUGACCGC-GCAGCGGgaagCCGccccGCUGc -3' miRNA:   3'- gACUGGCGuCGUCGUUa---GGCua--CGAC- -5'
21062	3'	-54.7	NC_004745.1	+	4543	1.07	0.00058
	Target:  5'- uCUGACCGCAGCAGCAAUCCGAUGCUGc -3' miRNA:   3'- -GACUGGCGUCGUCGUUAGGCUACGAC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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