miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21063 5' -55.8 NC_004745.1 + 18987 0.66 0.510289
Target:  5'- gACGGauuccguuaaGCGCCagcagcggGAACUGGCCGCUg- -3'
miRNA:   3'- -UGCC----------UGUGGgaa-----CUUGACUGGCGGug -5'
21063 5' -55.8 NC_004745.1 + 3985 0.66 0.509197
Target:  5'- gGCGGuggggugACGCCCUgaUGAcgaacuGCUGACCGgCGu -3'
miRNA:   3'- -UGCC-------UGUGGGA--ACU------UGACUGGCgGUg -5'
21063 5' -55.8 NC_004745.1 + 24176 0.66 0.488652
Target:  5'- -gGGAgGCCagcGAGCaGACCGCCGa -3'
miRNA:   3'- ugCCUgUGGgaaCUUGaCUGGCGGUg -5'
21063 5' -55.8 NC_004745.1 + 2008 0.66 0.477995
Target:  5'- -aGGACGCCC-UGAAaggcGGCUGCaCGCu -3'
miRNA:   3'- ugCCUGUGGGaACUUga--CUGGCG-GUG- -5'
21063 5' -55.8 NC_004745.1 + 20808 0.68 0.387846
Target:  5'- uCaGACACaCUUGAcCaGACCGCCGCa -3'
miRNA:   3'- uGcCUGUGgGAACUuGaCUGGCGGUG- -5'
21063 5' -55.8 NC_004745.1 + 3783 0.69 0.346288
Target:  5'- aGCGGugACCgCUguugcUGAacaugugcaggaaaaACUGAgCGCCACu -3'
miRNA:   3'- -UGCCugUGG-GA-----ACU---------------UGACUgGCGGUG- -5'
21063 5' -55.8 NC_004745.1 + 22231 0.69 0.33429
Target:  5'- uAUGGugACCUgcgGGuuuuuuuuaccGCUGGCCGUCACc -3'
miRNA:   3'- -UGCCugUGGGaa-CU-----------UGACUGGCGGUG- -5'
21063 5' -55.8 NC_004745.1 + 2763 0.69 0.325907
Target:  5'- -gGGACGCCagaUUGAAC-GACUGgCACg -3'
miRNA:   3'- ugCCUGUGGg--AACUUGaCUGGCgGUG- -5'
21063 5' -55.8 NC_004745.1 + 23898 0.7 0.293949
Target:  5'- cCGGgcaACACCCaauucacGGACUG-CCGCCACu -3'
miRNA:   3'- uGCC---UGUGGGaa-----CUUGACuGGCGGUG- -5'
21063 5' -55.8 NC_004745.1 + 6135 0.7 0.28635
Target:  5'- aACGuAUGCgCCUUGAGCaGACCGUCGCc -3'
miRNA:   3'- -UGCcUGUG-GGAACUUGaCUGGCGGUG- -5'
21063 5' -55.8 NC_004745.1 + 5600 1.1 0.000329
Target:  5'- gACGGACACCCUUGAACUGACCGCCACg -3'
miRNA:   3'- -UGCCUGUGGGAACUUGACUGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.