miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21064 5' -55.8 NC_004745.1 + 6978 0.66 0.502613
Target:  5'- cAAUCACCUGAUA----ACCGGCGauacCCa -3'
miRNA:   3'- -UUAGUGGACUGUgacgUGGCCGCa---GG- -5'
21064 5' -55.8 NC_004745.1 + 19171 0.66 0.481065
Target:  5'- --gCGCaCUGACAC-GCGCCaGcGCGUCa -3'
miRNA:   3'- uuaGUG-GACUGUGaCGUGG-C-CGCAGg -5'
21064 5' -55.8 NC_004745.1 + 5213 0.66 0.481065
Target:  5'- cAUCAUgUGGCGCUGUGCgGGacuCGUCa -3'
miRNA:   3'- uUAGUGgACUGUGACGUGgCC---GCAGg -5'
21064 5' -55.8 NC_004745.1 + 16880 0.66 0.481065
Target:  5'- aGGUCGCCgucGCACUgGCAUCGGUaugCCa -3'
miRNA:   3'- -UUAGUGGac-UGUGA-CGUGGCCGca-GG- -5'
21064 5' -55.8 NC_004745.1 + 1916 0.67 0.449616
Target:  5'- gAAUUugUUGACGacaagGCAUCGGUGUUCc -3'
miRNA:   3'- -UUAGugGACUGUga---CGUGGCCGCAGG- -5'
21064 5' -55.8 NC_004745.1 + 28800 0.67 0.419335
Target:  5'- cAUCaACCaGauuaaGCACUGCugCGGCGUgCu -3'
miRNA:   3'- uUAG-UGGaC-----UGUGACGugGCCGCAgG- -5'
21064 5' -55.8 NC_004745.1 + 6881 0.67 0.409519
Target:  5'- -cUgACCUGuCACUGcCugCGGUGUgCg -3'
miRNA:   3'- uuAgUGGACuGUGAC-GugGCCGCAgG- -5'
21064 5' -55.8 NC_004745.1 + 4379 0.67 0.409519
Target:  5'- -uUCGgCUGACGCucggUGcCACCGGCGgugUCg -3'
miRNA:   3'- uuAGUgGACUGUG----AC-GUGGCCGCa--GG- -5'
21064 5' -55.8 NC_004745.1 + 4313 0.68 0.390323
Target:  5'- --cCACC-GACACcgccggugGCACCGaGCGUCa -3'
miRNA:   3'- uuaGUGGaCUGUGa-------CGUGGC-CGCAGg -5'
21064 5' -55.8 NC_004745.1 + 22640 0.68 0.380948
Target:  5'- ---aGCCUGACACUcugACCGGUGuuUCCg -3'
miRNA:   3'- uuagUGGACUGUGAcg-UGGCCGC--AGG- -5'
21064 5' -55.8 NC_004745.1 + 20968 0.68 0.370811
Target:  5'- cAUCAgCCUGACgggugguACUGCGCCGGgGa-- -3'
miRNA:   3'- uUAGU-GGACUG-------UGACGUGGCCgCagg -5'
21064 5' -55.8 NC_004745.1 + 18313 0.68 0.362655
Target:  5'- ---uGCCggGACGCUGCGC-GGUGUCa -3'
miRNA:   3'- uuagUGGa-CUGUGACGUGgCCGCAGg -5'
21064 5' -55.8 NC_004745.1 + 17568 0.7 0.295733
Target:  5'- ---aACCUGACcCUGCGCCaGCGUa- -3'
miRNA:   3'- uuagUGGACUGuGACGUGGcCGCAgg -5'
21064 5' -55.8 NC_004745.1 + 5976 0.7 0.288078
Target:  5'- -uUCACCcu-CACUG-ACCGGCGUgCCg -3'
miRNA:   3'- uuAGUGGacuGUGACgUGGCCGCA-GG- -5'
21064 5' -55.8 NC_004745.1 + 7538 0.7 0.288078
Target:  5'- uGUCG-CUGGCGCUGaUGCCGGCacuGUCCc -3'
miRNA:   3'- uUAGUgGACUGUGAC-GUGGCCG---CAGG- -5'
21064 5' -55.8 NC_004745.1 + 3997 0.7 0.280578
Target:  5'- --aCGCCcugaUGACgaACUGCugACCGGCGUCa -3'
miRNA:   3'- uuaGUGG----ACUG--UGACG--UGGCCGCAGg -5'
21064 5' -55.8 NC_004745.1 + 5945 1.1 0.000295
Target:  5'- gAAUCACCUGACACUGCACCGGCGUCCa -3'
miRNA:   3'- -UUAGUGGACUGUGACGUGGCCGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.