miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21067 5' -59.5 NC_004745.1 + 1338 0.66 0.383421
Target:  5'- -uGCGGCugGCCUcAUaggugGCGCUGCGUCc -3'
miRNA:   3'- ccUGCCGugUGGGaUG-----CGCGGUGCGG- -5'
21067 5' -59.5 NC_004745.1 + 5961 0.66 0.383421
Target:  5'- cGGCGuGC-CGCCCUgGCGCGggGCGCa -3'
miRNA:   3'- cCUGC-CGuGUGGGA-UGCGCggUGCGg -5'
21067 5' -59.5 NC_004745.1 + 5706 0.66 0.374541
Target:  5'- gGGGCgcuGGCGCACCUgcaACGUGCgaCACaGCUc -3'
miRNA:   3'- -CCUG---CCGUGUGGGa--UGCGCG--GUG-CGG- -5'
21067 5' -59.5 NC_004745.1 + 28496 0.66 0.372782
Target:  5'- -cGCGGaacauuugcccCACCCUGCGCGCUgauauacaACGCa -3'
miRNA:   3'- ccUGCCgu---------GUGGGAUGCGCGG--------UGCGg -5'
21067 5' -59.5 NC_004745.1 + 7924 0.66 0.365801
Target:  5'- uGACGGCAgGCCgUACauaucaGCCggaagaacagcgACGCCa -3'
miRNA:   3'- cCUGCCGUgUGGgAUGcg----CGG------------UGCGG- -5'
21067 5' -59.5 NC_004745.1 + 18662 0.66 0.365801
Target:  5'- cGcCGGaGCGCCUUuuCGCGCCAUGUg -3'
miRNA:   3'- cCuGCCgUGUGGGAu-GCGCGGUGCGg -5'
21067 5' -59.5 NC_004745.1 + 23431 0.66 0.357203
Target:  5'- cGAUGGCcuaugcGCACCUUGCGCcugacuaccuGCaaaAUGCCg -3'
miRNA:   3'- cCUGCCG------UGUGGGAUGCG----------CGg--UGCGG- -5'
21067 5' -59.5 NC_004745.1 + 779 0.66 0.357203
Target:  5'- aGGACGGCacccaccaguaaACAUCCU-Cuu-CCACGCCa -3'
miRNA:   3'- -CCUGCCG------------UGUGGGAuGcgcGGUGCGG- -5'
21067 5' -59.5 NC_004745.1 + 7624 0.66 0.348748
Target:  5'- uGACGGcCACGCUCUGCGgGUaaaucagggaCAgUGCCg -3'
miRNA:   3'- cCUGCC-GUGUGGGAUGCgCG----------GU-GCGG- -5'
21067 5' -59.5 NC_004745.1 + 18393 0.66 0.340437
Target:  5'- uGACGGCACcgaugcugACCgaGCaggagguCGCCGCGCUg -3'
miRNA:   3'- cCUGCCGUG--------UGGgaUGc------GCGGUGCGG- -5'
21067 5' -59.5 NC_004745.1 + 8524 0.67 0.33227
Target:  5'- uGACGGCaucagucaGCGCCCUGCGCaGgC-UGUCg -3'
miRNA:   3'- cCUGCCG--------UGUGGGAUGCG-CgGuGCGG- -5'
21067 5' -59.5 NC_004745.1 + 7224 0.67 0.33227
Target:  5'- cGACGGUuaaACACCUU-CGCcggucgGCCAUGCg -3'
miRNA:   3'- cCUGCCG---UGUGGGAuGCG------CGGUGCGg -5'
21067 5' -59.5 NC_004745.1 + 29048 0.67 0.324247
Target:  5'- -uACGGU-UGCUCcACGCGCCAgCGCCu -3'
miRNA:   3'- ccUGCCGuGUGGGaUGCGCGGU-GCGG- -5'
21067 5' -59.5 NC_004745.1 + 1338 0.67 0.324247
Target:  5'- uGGGCGaccauGCACGCCCUguuaaAUGaGCCAcucacCGCCg -3'
miRNA:   3'- -CCUGC-----CGUGUGGGA-----UGCgCGGU-----GCGG- -5'
21067 5' -59.5 NC_004745.1 + 19165 0.68 0.279157
Target:  5'- uGACa-CGCGCCa-GCGCGUCACGCUg -3'
miRNA:   3'- cCUGccGUGUGGgaUGCGCGGUGCGG- -5'
21067 5' -59.5 NC_004745.1 + 5599 0.68 0.271453
Target:  5'- uGACGG-ACACCCUugaacugAC-CGCCACGgCu -3'
miRNA:   3'- cCUGCCgUGUGGGA-------UGcGCGGUGCgG- -5'
21067 5' -59.5 NC_004745.1 + 5254 0.68 0.251961
Target:  5'- gGGGCGGCuucCCgCUGCGCgGUCAuCGCUg -3'
miRNA:   3'- -CCUGCCGuguGG-GAUGCG-CGGU-GCGG- -5'
21067 5' -59.5 NC_004745.1 + 5735 0.69 0.245512
Target:  5'- -uGCGGCAuCACCa---GCGUCACGCa -3'
miRNA:   3'- ccUGCCGU-GUGGgaugCGCGGUGCGg -5'
21067 5' -59.5 NC_004745.1 + 19565 0.69 0.239201
Target:  5'- aGGGCGGCGuuuucuucCAUCgUGCGgcgguuCGCCAgCGCCa -3'
miRNA:   3'- -CCUGCCGU--------GUGGgAUGC------GCGGU-GCGG- -5'
21067 5' -59.5 NC_004745.1 + 10263 0.69 0.226985
Target:  5'- uGGCGGUGCugaaaugggaACCC--CGCGUCACGCUg -3'
miRNA:   3'- cCUGCCGUG----------UGGGauGCGCGGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.