Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 7635 | 0.66 | 0.510885 |
Target: 5'- uGUgGUUGcCGgUGGUGUCGGcgugUAUGCCAc -3' miRNA: 3'- -CGgCAGC-GUgACCGUAGCC----AUACGGU- -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 74 | 0.66 | 0.500055 |
Target: 5'- cGgCGUuuagauugUGCGCcggGGCAUUGGUGUGUCu -3' miRNA: 3'- -CgGCA--------GCGUGa--CCGUAGCCAUACGGu -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 2578 | 0.66 | 0.457821 |
Target: 5'- --aGUUGCACUGGUAUCGc---GCCGg -3' miRNA: 3'- cggCAGCGUGACCGUAGCcauaCGGU- -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 10065 | 0.67 | 0.43743 |
Target: 5'- cGCUGUCGC-CUGGguguuUGUgGGUAUGCa- -3' miRNA: 3'- -CGGCAGCGuGACC-----GUAgCCAUACGgu -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 3601 | 0.67 | 0.417571 |
Target: 5'- uGCCGagGCuuGCcgGGuCAUCGGUGacgGCCAg -3' miRNA: 3'- -CGGCagCG--UGa-CC-GUAGCCAUa--CGGU- -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 7379 | 0.67 | 0.398271 |
Target: 5'- cGCUGUCGCAauaucugGGCGUcccugcCGG-GUGCCGg -3' miRNA: 3'- -CGGCAGCGUga-----CCGUA------GCCaUACGGU- -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 6425 | 0.68 | 0.352601 |
Target: 5'- cGCCuuUCGCACUGGCAUCcac--GCCGc -3' miRNA: 3'- -CGGc-AGCGUGACCGUAGccauaCGGU- -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 8377 | 0.69 | 0.335401 |
Target: 5'- gGCUGcuugagaaCGCGCUGGCA-CGcUGUGCCAg -3' miRNA: 3'- -CGGCa-------GCGUGACCGUaGCcAUACGGU- -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 1748 | 0.7 | 0.29512 |
Target: 5'- -gCGUgGUACUGGCAccgcCGGUGgugGCCGg -3' miRNA: 3'- cgGCAgCGUGACCGUa---GCCAUa--CGGU- -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 2970 | 0.7 | 0.265685 |
Target: 5'- cGCUGcUGUACUGGCAggGGUuuuccGUGCCGc -3' miRNA: 3'- -CGGCaGCGUGACCGUagCCA-----UACGGU- -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 20267 | 0.7 | 0.26498 |
Target: 5'- uGCCGgcggUGCACUGGUgcugacuggcaucAUCGGU--GCCAu -3' miRNA: 3'- -CGGCa---GCGUGACCG-------------UAGCCAuaCGGU- -5' |
|||||||
21070 | 5' | -56.2 | NC_004745.1 | + | 16884 | 1.11 | 0.000257 |
Target: 5'- cGCCGUCGCACUGGCAUCGGUAUGCCAg -3' miRNA: 3'- -CGGCAGCGUGACCGUAGCCAUACGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home