miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21070 5' -56.2 NC_004745.1 + 7635 0.66 0.510885
Target:  5'- uGUgGUUGcCGgUGGUGUCGGcgugUAUGCCAc -3'
miRNA:   3'- -CGgCAGC-GUgACCGUAGCC----AUACGGU- -5'
21070 5' -56.2 NC_004745.1 + 74 0.66 0.500055
Target:  5'- cGgCGUuuagauugUGCGCcggGGCAUUGGUGUGUCu -3'
miRNA:   3'- -CgGCA--------GCGUGa--CCGUAGCCAUACGGu -5'
21070 5' -56.2 NC_004745.1 + 2578 0.66 0.457821
Target:  5'- --aGUUGCACUGGUAUCGc---GCCGg -3'
miRNA:   3'- cggCAGCGUGACCGUAGCcauaCGGU- -5'
21070 5' -56.2 NC_004745.1 + 10065 0.67 0.43743
Target:  5'- cGCUGUCGC-CUGGguguuUGUgGGUAUGCa- -3'
miRNA:   3'- -CGGCAGCGuGACC-----GUAgCCAUACGgu -5'
21070 5' -56.2 NC_004745.1 + 3601 0.67 0.417571
Target:  5'- uGCCGagGCuuGCcgGGuCAUCGGUGacgGCCAg -3'
miRNA:   3'- -CGGCagCG--UGa-CC-GUAGCCAUa--CGGU- -5'
21070 5' -56.2 NC_004745.1 + 7379 0.67 0.398271
Target:  5'- cGCUGUCGCAauaucugGGCGUcccugcCGG-GUGCCGg -3'
miRNA:   3'- -CGGCAGCGUga-----CCGUA------GCCaUACGGU- -5'
21070 5' -56.2 NC_004745.1 + 6425 0.68 0.352601
Target:  5'- cGCCuuUCGCACUGGCAUCcac--GCCGc -3'
miRNA:   3'- -CGGc-AGCGUGACCGUAGccauaCGGU- -5'
21070 5' -56.2 NC_004745.1 + 8377 0.69 0.335401
Target:  5'- gGCUGcuugagaaCGCGCUGGCA-CGcUGUGCCAg -3'
miRNA:   3'- -CGGCa-------GCGUGACCGUaGCcAUACGGU- -5'
21070 5' -56.2 NC_004745.1 + 1748 0.7 0.29512
Target:  5'- -gCGUgGUACUGGCAccgcCGGUGgugGCCGg -3'
miRNA:   3'- cgGCAgCGUGACCGUa---GCCAUa--CGGU- -5'
21070 5' -56.2 NC_004745.1 + 2970 0.7 0.265685
Target:  5'- cGCUGcUGUACUGGCAggGGUuuuccGUGCCGc -3'
miRNA:   3'- -CGGCaGCGUGACCGUagCCA-----UACGGU- -5'
21070 5' -56.2 NC_004745.1 + 20267 0.7 0.26498
Target:  5'- uGCCGgcggUGCACUGGUgcugacuggcaucAUCGGU--GCCAu -3'
miRNA:   3'- -CGGCa---GCGUGACCG-------------UAGCCAuaCGGU- -5'
21070 5' -56.2 NC_004745.1 + 16884 1.11 0.000257
Target:  5'- cGCCGUCGCACUGGCAUCGGUAUGCCAg -3'
miRNA:   3'- -CGGCAGCGUGACCGUAGCCAUACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.