miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21071 3' -56.8 NC_004745.1 + 6609 0.66 0.458249
Target:  5'- aCUGGCUGaacuGGGUguggugcugccacacGGCACCGCCGuCGAa- -3'
miRNA:   3'- -GGCCGAC----CUCG---------------UUGUGGCGGC-GUUau -5'
21071 3' -56.8 NC_004745.1 + 700 0.67 0.404325
Target:  5'- cCUGGCUGaauGAGuCGGCcacgcuguuCCGCCGCAAg- -3'
miRNA:   3'- -GGCCGAC---CUC-GUUGu--------GGCGGCGUUau -5'
21071 3' -56.8 NC_004745.1 + 5482 0.67 0.385394
Target:  5'- aCGGuCUGaccaugccGGGUaAACACCGCCGCAc-- -3'
miRNA:   3'- gGCC-GAC--------CUCG-UUGUGGCGGCGUuau -5'
21071 3' -56.8 NC_004745.1 + 7688 0.67 0.367058
Target:  5'- aCgGGCgGGAGCu--GCCGCCGgAAUc -3'
miRNA:   3'- -GgCCGaCCUCGuugUGGCGGCgUUAu -5'
21071 3' -56.8 NC_004745.1 + 28719 0.67 0.365258
Target:  5'- aCCGGCUcccacaccuucuGAGC-ACGCCGCaGCAGUGc -3'
miRNA:   3'- -GGCCGAc-----------CUCGuUGUGGCGgCGUUAU- -5'
21071 3' -56.8 NC_004745.1 + 10250 0.67 0.361676
Target:  5'- gCGGCUGGucaaucauugacgccAGCAACGa-GCCGUAAUc -3'
miRNA:   3'- gGCCGACC---------------UCGUUGUggCGGCGUUAu -5'
21071 3' -56.8 NC_004745.1 + 10697 0.68 0.3407
Target:  5'- aCCGGCUGcacaggccAGCAuCACCGCCcguGCAGc- -3'
miRNA:   3'- -GGCCGACc-------UCGUuGUGGCGG---CGUUau -5'
21071 3' -56.8 NC_004745.1 + 19684 0.69 0.292182
Target:  5'- gCCGGUgucAGCAuugaagaaACCGCCGCAAUGg -3'
miRNA:   3'- -GGCCGaccUCGUug------UGGCGGCGUUAU- -5'
21071 3' -56.8 NC_004745.1 + 7171 0.69 0.292182
Target:  5'- aCCGGCgaaGGuGUuuaACCGUCGCGGUGa -3'
miRNA:   3'- -GGCCGa--CCuCGuugUGGCGGCGUUAU- -5'
21071 3' -56.8 NC_004745.1 + 6965 0.69 0.270023
Target:  5'- aCCGGCgauacccagcaUGGAGCcgaugccgcACACCGCagGCAGUGa -3'
miRNA:   3'- -GGCCG-----------ACCUCGu--------UGUGGCGg-CGUUAU- -5'
21071 3' -56.8 NC_004745.1 + 5606 0.69 0.270023
Target:  5'- aCCGGCagcGuGAGCGcGCAUgGCCGCAAg- -3'
miRNA:   3'- -GGCCGa--C-CUCGU-UGUGgCGGCGUUau -5'
21071 3' -56.8 NC_004745.1 + 2820 0.7 0.236126
Target:  5'- aCGGCUgaugGGGGCAACgcugucccaGCCGUCGCGc-- -3'
miRNA:   3'- gGCCGA----CCUCGUUG---------UGGCGGCGUuau -5'
21071 3' -56.8 NC_004745.1 + 11151 0.7 0.229791
Target:  5'- aCCGGCUGGGGCGcgACAuCCGuCUGUc--- -3'
miRNA:   3'- -GGCCGACCUCGU--UGU-GGC-GGCGuuau -5'
21071 3' -56.8 NC_004745.1 + 27734 0.76 0.091872
Target:  5'- gCCGGUauuGAGCGuuACGCCGCCGCAGa- -3'
miRNA:   3'- -GGCCGac-CUCGU--UGUGGCGGCGUUau -5'
21071 3' -56.8 NC_004745.1 + 18132 1.09 0.000303
Target:  5'- aCCGGCUGGAGCAACACCGCCGCAAUAu -3'
miRNA:   3'- -GGCCGACCUCGUUGUGGCGGCGUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.