miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21072 3' -54.7 NC_004745.1 + 27143 0.66 0.582529
Target:  5'- aCCGaCGCGucguuGCUguuuCUGGCagAGCGUGACc -3'
miRNA:   3'- -GGC-GUGU-----CGAauu-GGCCG--UCGCACUG- -5'
21072 3' -54.7 NC_004745.1 + 5648 0.66 0.582529
Target:  5'- gCGCGCaaAGCUgcacaaaaucACCGGUcuguuucuGCGUGACg -3'
miRNA:   3'- gGCGUG--UCGAau--------UGGCCGu-------CGCACUG- -5'
21072 3' -54.7 NC_004745.1 + 9573 0.67 0.482258
Target:  5'- gCCGC-CGGuCUgcACuCGGCAGCGaccGGCg -3'
miRNA:   3'- -GGCGuGUC-GAauUG-GCCGUCGCa--CUG- -5'
21072 3' -54.7 NC_004745.1 + 20579 0.68 0.471602
Target:  5'- gCCGCu--GUUUGACUGGCuGgGUGAa -3'
miRNA:   3'- -GGCGuguCGAAUUGGCCGuCgCACUg -5'
21072 3' -54.7 NC_004745.1 + 2008 0.68 0.456887
Target:  5'- uCCGCACAGagaagaccuCCGGCAaggGCGUuauGACu -3'
miRNA:   3'- -GGCGUGUCgaauu----GGCCGU---CGCA---CUG- -5'
21072 3' -54.7 NC_004745.1 + 5557 0.68 0.430234
Target:  5'- aUGUACGGCgggGugCGGCGGUGUuuacccGGCa -3'
miRNA:   3'- gGCGUGUCGaa-UugGCCGUCGCA------CUG- -5'
21072 3' -54.7 NC_004745.1 + 1251 0.69 0.381655
Target:  5'- gCGgGguGCUgauACCGGCGGUgaGUGGCu -3'
miRNA:   3'- gGCgUguCGAau-UGGCCGUCG--CACUG- -5'
21072 3' -54.7 NC_004745.1 + 21199 0.69 0.372387
Target:  5'- gCUGCAUGGUcugGugUGGCAGCGUcuGGCg -3'
miRNA:   3'- -GGCGUGUCGaa-UugGCCGUCGCA--CUG- -5'
21072 3' -54.7 NC_004745.1 + 5827 0.7 0.354316
Target:  5'- cCCGCGCcccGCgUAAgacCCGG-AGCGUGACa -3'
miRNA:   3'- -GGCGUGu--CGaAUU---GGCCgUCGCACUG- -5'
21072 3' -54.7 NC_004745.1 + 21321 0.7 0.345516
Target:  5'- gCCGguCAGUUcGggauaaagcacACCGGcCAGCGUGAUg -3'
miRNA:   3'- -GGCguGUCGAaU-----------UGGCC-GUCGCACUG- -5'
21072 3' -54.7 NC_004745.1 + 2731 0.7 0.328389
Target:  5'- aCCGCuACAGUcaGACCGGCAaCGaGGCa -3'
miRNA:   3'- -GGCG-UGUCGaaUUGGCCGUcGCaCUG- -5'
21072 3' -54.7 NC_004745.1 + 11410 0.7 0.320064
Target:  5'- uCCGCACAgGCUUuugCGGCAGCaacuucaagcgGUGAUg -3'
miRNA:   3'- -GGCGUGU-CGAAuugGCCGUCG-----------CACUG- -5'
21072 3' -54.7 NC_004745.1 + 3966 0.71 0.303891
Target:  5'- gCGcCGCAGCaaggccACCGGCGGUgggGUGACg -3'
miRNA:   3'- gGC-GUGUCGaau---UGGCCGUCG---CACUG- -5'
21072 3' -54.7 NC_004745.1 + 4601 0.71 0.280823
Target:  5'- aCCGCAaugaAGCc---CCGGCGcGCGUGAUg -3'
miRNA:   3'- -GGCGUg---UCGaauuGGCCGU-CGCACUG- -5'
21072 3' -54.7 NC_004745.1 + 9444 0.72 0.273448
Target:  5'- gCCGC-CGGgUcauACCGGCGGCaauGUGACg -3'
miRNA:   3'- -GGCGuGUCgAau-UGGCCGUCG---CACUG- -5'
21072 3' -54.7 NC_004745.1 + 5616 0.72 0.273448
Target:  5'- --uCACAGacucACCGGCAGCGUGAg -3'
miRNA:   3'- ggcGUGUCgaauUGGCCGUCGCACUg -5'
21072 3' -54.7 NC_004745.1 + 11935 0.72 0.26623
Target:  5'- gCUGC-CAGCUUugcggcuCCGGCAGUaGUGAUa -3'
miRNA:   3'- -GGCGuGUCGAAuu-----GGCCGUCG-CACUG- -5'
21072 3' -54.7 NC_004745.1 + 11141 0.72 0.26623
Target:  5'- aCgGCACAGC---ACCGGCuggGGCGcGACa -3'
miRNA:   3'- -GgCGUGUCGaauUGGCCG---UCGCaCUG- -5'
21072 3' -54.7 NC_004745.1 + 21828 0.73 0.208065
Target:  5'- aCCGUcaggACAGCgccacgAACCGGCAGCccGACc -3'
miRNA:   3'- -GGCG----UGUCGaa----UUGGCCGUCGcaCUG- -5'
21072 3' -54.7 NC_004745.1 + 17805 0.75 0.155281
Target:  5'- cCCGCACcgcgauaguuuucgAGCUUAcgggucaguuUUGGCAGCGUGACg -3'
miRNA:   3'- -GGCGUG--------------UCGAAUu---------GGCCGUCGCACUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.