miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21073 3' -50.3 NC_004745.1 + 18384 0.66 0.840994
Target:  5'- uGCCGcgcAUGACgGCACcgAUGCuGACc -3'
miRNA:   3'- gCGGCuu-UACUGgCGUGa-UGCGuUUG- -5'
21073 3' -50.3 NC_004745.1 + 11218 0.66 0.821556
Target:  5'- uGUCGAAcUGACUGCACcACugGCuGACa -3'
miRNA:   3'- gCGGCUUuACUGGCGUGaUG--CGuUUG- -5'
21073 3' -50.3 NC_004745.1 + 7748 0.66 0.821556
Target:  5'- aGCCGGu---GCCGUg--GCGCAGACg -3'
miRNA:   3'- gCGGCUuuacUGGCGugaUGCGUUUG- -5'
21073 3' -50.3 NC_004745.1 + 1003 0.66 0.801184
Target:  5'- aGCUGuGAUGcACgGCAgcACGCAGACu -3'
miRNA:   3'- gCGGCuUUAC-UGgCGUgaUGCGUUUG- -5'
21073 3' -50.3 NC_004745.1 + 5192 0.66 0.79068
Target:  5'- gGCaGcGAUGACCGCGCaGCGgGAAg -3'
miRNA:   3'- gCGgCuUUACUGGCGUGaUGCgUUUg -5'
21073 3' -50.3 NC_004745.1 + 20158 0.67 0.769107
Target:  5'- aGCaGGAA-GG-CGCACUGCGUAAGCu -3'
miRNA:   3'- gCGgCUUUaCUgGCGUGAUGCGUUUG- -5'
21073 3' -50.3 NC_004745.1 + 19435 0.67 0.746872
Target:  5'- cCGCCGAGGcGGCgGUAUUGuCGcCGAGCu -3'
miRNA:   3'- -GCGGCUUUaCUGgCGUGAU-GC-GUUUG- -5'
21073 3' -50.3 NC_004745.1 + 27091 0.68 0.712534
Target:  5'- gCGUCGuuuAUGGCCGCGCauugaGCGCGu-- -3'
miRNA:   3'- -GCGGCuu-UACUGGCGUGa----UGCGUuug -5'
21073 3' -50.3 NC_004745.1 + 4533 0.69 0.665516
Target:  5'- uGCCGAAAccucUGACCGCA--GCaGCAAu- -3'
miRNA:   3'- gCGGCUUU----ACUGGCGUgaUG-CGUUug -5'
21073 3' -50.3 NC_004745.1 + 7237 0.69 0.665516
Target:  5'- -cCUGuucUGGCCGCAUUAcCGCAAACa -3'
miRNA:   3'- gcGGCuuuACUGGCGUGAU-GCGUUUG- -5'
21073 3' -50.3 NC_004745.1 + 28601 0.69 0.653636
Target:  5'- gCGCCGAGAUG-CgGCGCguaaAUGCcGACc -3'
miRNA:   3'- -GCGGCUUUACuGgCGUGa---UGCGuUUG- -5'
21073 3' -50.3 NC_004745.1 + 11625 0.69 0.653636
Target:  5'- aGCCGAGcgGcuccaccacacGCCGgAUUGCGCcGACa -3'
miRNA:   3'- gCGGCUUuaC-----------UGGCgUGAUGCGuUUG- -5'
21073 3' -50.3 NC_004745.1 + 10385 0.69 0.634584
Target:  5'- gGCCGGuuaacGUGACCGUcauucgcccgucaaaACUGCGCGc-- -3'
miRNA:   3'- gCGGCUu----UACUGGCG---------------UGAUGCGUuug -5'
21073 3' -50.3 NC_004745.1 + 20441 0.69 0.629818
Target:  5'- gGCCGugGUGGCCGCuAUUGuCGCcgGGGCg -3'
miRNA:   3'- gCGGCuuUACUGGCG-UGAU-GCG--UUUG- -5'
21073 3' -50.3 NC_004745.1 + 12194 0.69 0.629818
Target:  5'- gGCUGAAGgcuCCGgACgUGCGCAGACc -3'
miRNA:   3'- gCGGCUUUacuGGCgUG-AUGCGUUUG- -5'
21073 3' -50.3 NC_004745.1 + 3842 0.7 0.594139
Target:  5'- uCGCUGAGAUGGaaaccgccuuuuCCGCACUuaaGCAGGa -3'
miRNA:   3'- -GCGGCUUUACU------------GGCGUGAug-CGUUUg -5'
21073 3' -50.3 NC_004745.1 + 8248 0.7 0.594139
Target:  5'- gCGCCGGu-UGcACCaGCGCccggccUGCGCAGACg -3'
miRNA:   3'- -GCGGCUuuAC-UGG-CGUG------AUGCGUUUG- -5'
21073 3' -50.3 NC_004745.1 + 19625 0.7 0.582306
Target:  5'- cCGCCGAuuuUGACgGCAUgagcgaUGCGCuGACc -3'
miRNA:   3'- -GCGGCUuu-ACUGgCGUG------AUGCGuUUG- -5'
21073 3' -50.3 NC_004745.1 + 28310 0.72 0.478034
Target:  5'- uGCCGAcAAUGggggcuuACCGUgaACUACGCAAAUu -3'
miRNA:   3'- gCGGCU-UUAC-------UGGCG--UGAUGCGUUUG- -5'
21073 3' -50.3 NC_004745.1 + 6945 0.73 0.405448
Target:  5'- aGCCGAu---GCCGCACacCGCAGGCa -3'
miRNA:   3'- gCGGCUuuacUGGCGUGauGCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.