miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21074 3' -62.3 NC_004745.1 + 22275 0.66 0.240437
Target:  5'- cGGUCAGCaaUCgcaaaaugauGGCgGUCGCCGUcGCUGc -3'
miRNA:   3'- -CCGGUCG--AG----------UCGgCGGCGGCA-CGACu -5'
21074 3' -62.3 NC_004745.1 + 1086 0.66 0.240437
Target:  5'- cGGUCAGCUUuaccggucuGGCaaaaagucugcgUGCUGCCGUGCa-- -3'
miRNA:   3'- -CCGGUCGAG---------UCG------------GCGGCGGCACGacu -5'
21074 3' -62.3 NC_004745.1 + 20427 0.66 0.240437
Target:  5'- aGCUGGC-CGGuuGUgGCCGUGgUGGc -3'
miRNA:   3'- cCGGUCGaGUCggCGgCGGCACgACU- -5'
21074 3' -62.3 NC_004745.1 + 972 0.66 0.240437
Target:  5'- -cCCAGCaggauuUCAGCCGCU-UUGUGCUGGa -3'
miRNA:   3'- ccGGUCG------AGUCGGCGGcGGCACGACU- -5'
21074 3' -62.3 NC_004745.1 + 11003 0.66 0.234239
Target:  5'- aGGCCGGU--GGCCGaCCGCgugacCGUGCa-- -3'
miRNA:   3'- -CCGGUCGagUCGGC-GGCG-----GCACGacu -5'
21074 3' -62.3 NC_004745.1 + 441 0.66 0.234239
Target:  5'- aGCCAGC---GCCGCUGaCC-UGCUGGa -3'
miRNA:   3'- cCGGUCGaguCGGCGGC-GGcACGACU- -5'
21074 3' -62.3 NC_004745.1 + 19054 0.66 0.222246
Target:  5'- cGGCCAGUUC--CCGCUGCUG-GCg-- -3'
miRNA:   3'- -CCGGUCGAGucGGCGGCGGCaCGacu -5'
21074 3' -62.3 NC_004745.1 + 17048 0.66 0.216448
Target:  5'- cGGCCAGauaaccaUCAGCUcaCGCUG-GCUGAa -3'
miRNA:   3'- -CCGGUCg------AGUCGGcgGCGGCaCGACU- -5'
21074 3' -62.3 NC_004745.1 + 7684 0.67 0.199827
Target:  5'- cGCUacgGGCgggAGCUGCCGCCGgaaucGCUGGc -3'
miRNA:   3'- cCGG---UCGag-UCGGCGGCGGCa----CGACU- -5'
21074 3' -62.3 NC_004745.1 + 10408 0.67 0.199827
Target:  5'- uGGCUGGC-CGG-UGUCGuuGUGCUGGc -3'
miRNA:   3'- -CCGGUCGaGUCgGCGGCggCACGACU- -5'
21074 3' -62.3 NC_004745.1 + 20965 0.68 0.156491
Target:  5'- --gCGGC-CAGCCGgUGCCGUGaCUGGc -3'
miRNA:   3'- ccgGUCGaGUCGGCgGCGGCAC-GACU- -5'
21074 3' -62.3 NC_004745.1 + 24173 0.69 0.14646
Target:  5'- aGGCCAGCgagCAGaCCGCCGaacuuugagugaGuUGCUGGa -3'
miRNA:   3'- -CCGGUCGa--GUC-GGCGGCgg----------C-ACGACU- -5'
21074 3' -62.3 NC_004745.1 + 10079 0.71 0.097153
Target:  5'- -cCCGGUUguGCCGCCGCUGUcGcCUGGg -3'
miRNA:   3'- ccGGUCGAguCGGCGGCGGCA-C-GACU- -5'
21074 3' -62.3 NC_004745.1 + 9030 0.71 0.089177
Target:  5'- cGCCAGCUCuGCacucaGCCGCCGacgccCUGAc -3'
miRNA:   3'- cCGGUCGAGuCGg----CGGCGGCac---GACU- -5'
21074 3' -62.3 NC_004745.1 + 19372 0.73 0.066861
Target:  5'- cGCCAGCUCGGCgacaauacCGCCGCCucgGCgGAu -3'
miRNA:   3'- cCGGUCGAGUCG--------GCGGCGGca-CGaCU- -5'
21074 3' -62.3 NC_004745.1 + 19969 1.1 0.000072
Target:  5'- aGGCCAGCUCAGCCGCCGCCGUGCUGAu -3'
miRNA:   3'- -CCGGUCGAGUCGGCGGCGGCACGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.