miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21076 5' -43.3 NC_004746.1 + 15327 0.74 0.826078
Target:  5'- -cAGUUAUuuaaaccuagcagaUGUUGAaaaAGCGAUUGUUCCu -3'
miRNA:   3'- aaUCAAUG--------------ACAACU---UCGUUGACAAGG- -5'
21076 5' -43.3 NC_004746.1 + 25401 0.74 0.829182
Target:  5'- gUAGUUGCUGaaggUGAAGCGcUUGUUgCCu -3'
miRNA:   3'- aAUCAAUGACa---ACUUCGUuGACAA-GG- -5'
21076 5' -43.3 NC_004746.1 + 19203 0.72 0.91679
Target:  5'- -aAGUUAUUGUUGuuGCAgaucGCUGgcUUCCa -3'
miRNA:   3'- aaUCAAUGACAACuuCGU----UGAC--AAGG- -5'
21076 5' -43.3 NC_004746.1 + 13867 0.69 0.976379
Target:  5'- -aAGUgcUUGUUGgcGUAaaACUGUUCCc -3'
miRNA:   3'- aaUCAauGACAACuuCGU--UGACAAGG- -5'
21076 5' -43.3 NC_004746.1 + 25430 1.13 0.005684
Target:  5'- uUUAGUUACUGUUGAAGCAACUGUUCCa -3'
miRNA:   3'- -AAUCAAUGACAACUUCGUUGACAAGG- -5'
21076 5' -43.3 NC_004746.1 + 33289 0.78 0.615476
Target:  5'- -----aGCcGUUGggGUAACUGUUCCg -3'
miRNA:   3'- aaucaaUGaCAACuuCGUUGACAAGG- -5'
21076 5' -43.3 NC_004746.1 + 31178 0.69 0.98423
Target:  5'- aUAGUcugaGUUGGAGCGACaauaGUUCCa -3'
miRNA:   3'- aAUCAaugaCAACUUCGUUGa---CAAGG- -5'
21076 5' -43.3 NC_004746.1 + 11652 0.68 0.986347
Target:  5'- ---aUUACUaaagGaAAGCGACUGUUCCa -3'
miRNA:   3'- aaucAAUGAcaa-C-UUCGUUGACAAGG- -5'
21076 5' -43.3 NC_004746.1 + 19908 0.68 0.989921
Target:  5'- gUAGUUACUGUUuuAGUAAC---UCCa -3'
miRNA:   3'- aAUCAAUGACAAcuUCGUUGacaAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.